View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12520_low_12 (Length: 286)
Name: NF12520_low_12
Description: NF12520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12520_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 3 - 275
Target Start/End: Original strand, 31658707 - 31658979
Alignment:
| Q |
3 |
gtctcaaataatcaaaacaaaattcaaagttacatgatatgaggttatctgatgagaacaattgattttgagaagaataatcatcatgaatctcttcctt |
102 |
Q |
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| T |
31658707 |
gtctcaaataatcaaaataaacttcaaagttacatgatatgaggttatctgatgagaacaattgattttgagaagaataatcatcatgaatctcttcctt |
31658806 |
T |
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| Q |
103 |
aggatcctctattgtagatgcaagaaatggcaatggtgatggtggaaacgagttttcttctttaattggaatgttgttatcaaaactgagtaatatagaa |
202 |
Q |
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| T |
31658807 |
aggatcctcttttgtagatgcaagaaatggcaatggtgatggtggaaacgagttttcttctttaattggaatgttgttatcaaaactaagtaatatagaa |
31658906 |
T |
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| Q |
203 |
gagtcatttgatgacacaatggattccaaatttatatctgaatgcaaataacttttgcaagtgtgatgtccat |
275 |
Q |
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| T |
31658907 |
gagtcatttgatgacaaaatggattccaaatttatatctgaatgcaaataacttttgcaagtgtgatggccat |
31658979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 31650511 - 31650298
Alignment:
| Q |
1 |
atgtctcaaataatcaaaacaaaattcaaagttacatgatatgaggttatctgatgagaacaattgattttgagaagaataatcatcatgaatctcttcc |
100 |
Q |
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| T |
31650511 |
atgtctcaaataatcaaaataaacatcaaaatcgcataattggagattctccggtgagaacaattggttttgaggaaaatgatcatgatgtatctcttcc |
31650412 |
T |
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| Q |
101 |
ttaggatcctctattgtagatgcaagaaatggcaat---ggtgatggtggaaacgagttttcttctttaattggaatgttg---ttatcaaaactgagta |
194 |
Q |
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| T |
31650411 |
ttgggatctccttttgtagatgcaagaagtggcaatggtggtgatggtcgaaatggatattcttgtttatttgaaatgttgttattatcgaaactaagta |
31650312 |
T |
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| Q |
195 |
atatagaagagtca |
208 |
Q |
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| T |
31650311 |
atattgaagagtca |
31650298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 270
Target Start/End: Complemental strand, 31657342 - 31657244
Alignment:
| Q |
172 |
aatgttgttatcaaaactgagtaatatagaagagtcatttgatgacacaatggattccaaatttatatctgaatgcaaataacttttgcaagtgtgatg |
270 |
Q |
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| T |
31657342 |
aatgttgttatcgaaactaagtaatatagaagagtcatcgtagcacaaaatggattccaattttatgtctgaatggtaagagcttttgcaagtgtgatg |
31657244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 31657434 - 31657390
Alignment:
| Q |
92 |
atctcttccttaggatcctctattgtagatgcaagaaatggcaat |
136 |
Q |
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| T |
31657434 |
atctcttccttgggttcctcttttgtagatgcaagaagtggcaat |
31657390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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