View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12520_low_14 (Length: 280)
Name: NF12520_low_14
Description: NF12520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12520_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 30242412 - 30242655
Alignment:
| Q |
19 |
aaactaactaaccaacttgaaaacaaacggccactaaatgttaccattgccattaaacaccatctccaaacctctaaccctaataaatgcatgtttgtta |
118 |
Q |
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| T |
30242412 |
aaactaactaaccaacttgaaaacaaacggccactaaatgttaccattgccattaaacaccatctccaaacctctaaccctaataaatgcatgtttgtta |
30242511 |
T |
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| Q |
119 |
ttcctcttattgtgacagaacaaaccaaacatgttaatatgtttagaaatagtatccattcaaaaacaagtctccactttactttaaannnnnnnnnnnn |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30242512 |
ttcctcttattgtgacagaacaaaccaaacatgttaatatgtttagaaataatatccattcaaaaacaagtctccactttactttaaattttttcttttt |
30242611 |
T |
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| Q |
219 |
gttgcgtgacttcgaatcacgcaaaacctcttcatcctcatcct |
262 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
30242612 |
gttgtgtgacttcgaatcacgcaaaacctcttcgtcctcatcct |
30242655 |
T |
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