View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12520_low_16 (Length: 268)
Name: NF12520_low_16
Description: NF12520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12520_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 35479091 - 35478838
Alignment:
| Q |
5 |
gcagagactaatgtctcgtcacctataaagataaaatgagagtgctacctgccatctccatggattgaaggtgcgcgcatctttgaaatgatcggggttt |
104 |
Q |
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| T |
35479091 |
gcagagactaatgtctcgtcacctataaagataaaatgagagtgctacctgccatctccatggattgaaggtgcgcgcatctttgaaatgatcggggttt |
35478992 |
T |
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| Q |
105 |
agatgtacggcacgaaatgatgcaaagactttccacccctttggaatagtgtagcctgtattacaagtcaaaaattaaaattcaaaataaatgttttgat |
204 |
Q |
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| T |
35478991 |
agatgtacggcacgaaatgatgcaaagactttccacccctttggaatagtgtagcctgtattacaagtcaaaaattaaaattcaaaataaatgttttgat |
35478892 |
T |
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| Q |
205 |
tttaaattatgtttttgtcatgataatacatactatacctttgatattgatgtc |
258 |
Q |
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| T |
35478891 |
tttaaattatgtttttgtcatgataatgtatactatacctttgatattgatgtc |
35478838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 129
Target Start/End: Complemental strand, 31557257 - 31557178
Alignment:
| Q |
50 |
tacctgccatctccatggattgaaggtgcgcgcatctttgaaatgatcggggtttagatgtacggcacgaaatgatgcaa |
129 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| || || || | ||| || |||||||||||||||| |
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| T |
31557257 |
tacctgccatctccatggattgaaggtgcgagcatctttgaaatgttcaggattcaaatgcacagcacgaaatgatgcaa |
31557178 |
T |
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