View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12520_low_17 (Length: 259)
Name: NF12520_low_17
Description: NF12520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12520_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 20741311 - 20741062
Alignment:
| Q |
1 |
attcgctcaataacctcaatgcgatcagtcttgcaagcaacaagcttctctttaaggtctttgatttcagggttcaaatcagacaaaagcnnnnnnncct |
100 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
20741311 |
attcactcaataacctcaatgcgatcagtcttgcaagcaacaagcttctctttaaggtctttgatttcagggttcaaatcagacaaaagctttttttcct |
20741212 |
T |
|
| Q |
101 |
caggtgttaaatgatcaatgagctctgtgcccatctcagcttttttcgtagcaatgctacccttaagctgttcaatctgattctgaacatcttcaagtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20741211 |
caggtgttaaatgatcaatgagctctgtgcccatctcagcttttttcgtagcaatgctacccttaagctgttcaatctgattctgaacatcttcaagtga |
20741112 |
T |
|
| Q |
201 |
tttctcctacaagttatttcggaaaagataaaaagcaattagcagtgaac |
250 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20741111 |
tttctcctacaagttatttcggaaaagataaaaagcaattagcagtgaac |
20741062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 6 - 248
Target Start/End: Original strand, 50923475 - 50923717
Alignment:
| Q |
6 |
ctcaataacctcaatgcgatcagtcttgcaagcaacaagcttctctttaaggtctttgatttcagggttcaaatcagacaaaagcnnnnnnncctcaggt |
105 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||| | ||||||||||||||||||| || |||| ||| | || || |
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| T |
50923475 |
ctcaataacctcaatgcgatcattcttgcaagaaacaagcttctctttaaaggctttgatttcagggttcaattctgacataagttttttttcttctggc |
50923574 |
T |
|
| Q |
106 |
gttaaatgatcaatgagctctgtgcccatctcagcttttttcgtagcaatgctacccttaagctgttcaatctgattctgaacatcttcaagtgatttct |
205 |
Q |
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||||||||||||| ||| ||||||||||||||| |||||||| || |||||||| |||||||||||||||| |||||||| ||||| |||||||||| | |
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| T |
50923575 |
gttaaatgatcaacgaggtctgtgcccatctcatcttttttcctatcaatgctagccttaagctgttcaatatgattctggacatcaacaagtgatttat |
50923674 |
T |
|
| Q |
206 |
cctacaagttatttcggaaaagataaaaagcaattagcagtga |
248 |
Q |
| |
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|||||||| ||| |||||||||||||||||||||||||||| |
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| T |
50923675 |
cctacaagcaattatggaaaagataaaaagcaattagcagtga |
50923717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 29249825 - 29250009
Alignment:
| Q |
1 |
attcgctcaataacctcaatgcgatcagtcttgcaagcaacaagcttctctttaaggtctttgatttcagggttcaaatcagacaaaagcnnnnnnncct |
100 |
Q |
| |
|
|||||||||||||||| ||||| |||| ||||||||| |||||||| ||||||||||| |||||| || ||||| |||||| ||||| ||| |
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| T |
29249825 |
attcgctcaataacctaaatgcaatcattcttgcaagtaacaagctcctctttaaggtttttgatatcggggtttaaatca----aaagctgtttttcct |
29249920 |
T |
|
| Q |
101 |
caggtgttaaatgatcaatgagctctgtgcccatctcagcttttttcgtagcaatgctacccttaagctgttcaatctgattctgaacat |
190 |
Q |
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| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
29249921 |
ctggtgttaaatgatcaatgagctctgtgcc-atctcagcttttttcgtagcaatgctacccttaagttgttcaacctgattctgaacat |
29250009 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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