View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12520_low_18 (Length: 254)

Name: NF12520_low_18
Description: NF12520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12520_low_18
NF12520_low_18
[»] chr1 (11 HSPs)
chr1 (21-240)||(1842690-1842909)
chr1 (21-240)||(1868299-1868518)
chr1 (23-154)||(1816123-1816254)
chr1 (23-138)||(9161948-9162063)
chr1 (30-141)||(9218864-9218975)
chr1 (23-163)||(1856781-1856921)
chr1 (30-150)||(9118377-9118497)
chr1 (23-135)||(9156036-9156148)
chr1 (30-141)||(9170781-9170892)
chr1 (30-141)||(9200348-9200459)
chr1 (23-141)||(9229742-9229860)
[»] chr3 (5 HSPs)
chr3 (35-138)||(40568360-40568463)
chr3 (35-139)||(40591265-40591369)
chr3 (23-111)||(40597775-40597863)
chr3 (23-83)||(40573016-40573076)
chr3 (23-111)||(40579445-40579533)
[»] chr7 (2 HSPs)
chr7 (80-141)||(37567745-37567806)
chr7 (23-78)||(37572123-37572178)
[»] chr2 (1 HSPs)
chr2 (50-111)||(2015288-2015349)


Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 1842909 - 1842690
Alignment:
Q  21 tgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaac 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1842909 tgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaat 1842810  T
Q  121 aactacctcattaatgaattgattgatttggcttctatctattannnnnnnnnnnnngatagcaacgattcttttatcatctagaattcctttgaaaaca 220  Q
    || |||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||| ||||||| |||||    
T  1842809 aattacctcattaatgaattgattgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctagaaatcctttgtaaaca 1842710  T
Q  221 gtaccaaaaccacctttgcc 240  Q
    ||||||||||||||||||||    
T  1842709 gtaccaaaaccacctttgcc 1842690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 1868518 - 1868299
Alignment:
Q  21 tgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaac 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1868518 tgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaac 1868419  T
Q  121 aactacctcattaatgaattgattgatttggcttctatctattannnnnnnnnnnnngatagcaacgattcttttatcatctagaattcctttgaaaaca 220  Q
    ||| ||||||||||||||||||| ||||||||||||||||||||             ||||||||||||||||||||||||||||| ||||||||||||     
T  1868418 aaccacctcattaatgaattgatcgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctagaagtcctttgaaaacg 1868319  T
Q  221 gtaccaaaaccacctttgcc 240  Q
    ||||||||||||||||||||    
T  1868318 gtaccaaaaccacctttgcc 1868299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 1816123 - 1816254
Alignment:
Q  23 ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaa 122  Q
    |||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||| |||||||||||||||| ||||     
T  1816123 ccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccccaagagtttgaccacattcctgtgatttatttgagagacaacat 1816222  T
Q  123 ctacctcattaatgaattgattgatttggctt 154  Q
    | ||||| ||||||||||| |  |||||||||    
T  1816223 ccacctcgttaatgaattgttcaatttggctt 1816254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 9161948 - 9162063
Alignment:
Q  23 ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaa 122  Q
    |||||| |||| |||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |||||||    
T  9161948 ccattgctaacgaattcatacaccaacgaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttctatgatttatttgggacagaacaa 9162047  T
Q  123 ctacctcattaatgaa 138  Q
    ||||||| ||||||||    
T  9162048 ctacctcgttaatgaa 9162063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 9218864 - 9218975
Alignment:
Q  30 taacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaactacctc 129  Q
    ||||||||||||| |||||| |||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||| || ||||||||||||||    
T  9218864 taacaaattcatacaccaacgaaggaacttctgtctccaaacaacaccctaaaagtttgacaacgttcctatgatttatttgggacagaacaactacctc 9218963  T
Q  130 attaatgaattg 141  Q
    ||||||||||||    
T  9218964 attaatgaattg 9218975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 23 - 163
Target Start/End: Complemental strand, 1856921 - 1856781
Alignment:
Q  23 ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaa 122  Q
    |||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||||| ||||| || |||||||||||||||| ||||     
T  1856921 ccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacatttctgtgatttatttgagagacaacat 1856822  T
Q  123 ctacctcattaatgaattgattgatttggcttctatctatt 163  Q
    | ||||||||||||||||| |  ||||||||| | ||||||    
T  1856821 ccacctcattaatgaattgttcaatttggcttttgtctatt 1856781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 9118497 - 9118377
Alignment:
Q  30 taacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaactacctc 129  Q
    |||| |||||||| |||||  |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || |||| |||||||||    
T  9118497 taacgaattcatagaccaaggaaggaacttctgtctctaaacaacaccctaaaagtttgacaacattcctatgatttatttgggacagaataactacctc 9118398  T
Q  130 attaatgaattgattgatttg 150  Q
    |||||||||||| | ||||||    
T  9118397 attaatgaattgctcgatttg 9118377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 135
Target Start/End: Original strand, 9156036 - 9156148
Alignment:
Q  23 ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaa 122  Q
    |||||| |||| ||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| || || ||||    
T  9156036 ccattgctaacgaattcataaaccaaggaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttctgtgatttatttgggataggacaa 9156135  T
Q  123 ctacctcattaat 135  Q
    |||||||||||||    
T  9156136 ctacctcattaat 9156148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 9170781 - 9170892
Alignment:
Q  30 taacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaactacctc 129  Q
    |||||||||| || |||||  |||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||| |  ||||||||||||||    
T  9170781 taacaaattcgtacaccaatgaaggaacttctgtctctagacaacaccctaggagtttgacaacattcctatgatttatttgggtcagaacaactacctc 9170880  T
Q  130 attaatgaattg 141  Q
    ||||||||||||    
T  9170881 attaatgaattg 9170892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 9200348 - 9200459
Alignment:
Q  30 taacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaactacctc 129  Q
    |||||||||| || || ||  |||||||||||||||||| |||||| || | |||||||||||||||||||||||||||||| |  ||||||||||||||    
T  9200348 taacaaattcgtacactaatgaaggaacttctgtctctagacaacagcctaggagtttgacaacattcctatgatttatttgggtcagaacaactacctc 9200447  T
Q  130 attaatgaattg 141  Q
    ||||||||||||    
T  9200448 attaatgaattg 9200459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 9229742 - 9229860
Alignment:
Q  23 ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaa 122  Q
    |||||| ||| |||||||||||| |  |||||||||| |||||| |||||||| |||||||||||||||||||| |||||||||||||| || | |||||    
T  9229742 ccattgctaataaattcataaactagtaaaggaacttgtgtctccaaacaacatcccaagagtttgacaacatttctatgatttatttgggacaaaacaa 9229841  T
Q  123 ctacctcattaatgaattg 141  Q
    | |||||||| ||||||||    
T  9229842 ccacctcatttatgaattg 9229860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 138
Target Start/End: Complemental strand, 40568463 - 40568360
Alignment:
Q  35 aattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaactacctcattaa 134  Q
    ||||||||||| | ||| ||||||||||||||||||||||| |||||||| || || ||||| ||||| || ||||| || ||||| || || ||||| |    
T  40568463 aattcataaacaagcaagggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttgggaaagaacgaccacttcattga 40568364  T
Q  135 tgaa 138  Q
    ||||    
T  40568363 tgaa 40568360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 40591369 - 40591265
Alignment:
Q  35 aattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaactacctcattaa 134  Q
    ||||||||||| | ||| ||||||||||||||||||||||| ||||| | | | || ||||| ||||| || |||||||| ||||| || || ||||| |    
T  40591369 aattcataaacaagcaatggaacttctgtctctaaacaacaacccaaaattcttaccacatttctatggttgatttgagaaagaacgaccacttcattga 40591270  T
Q  135 tgaat 139  Q
    |||||    
T  40591269 tgaat 40591265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 40597863 - 40597775
Alignment:
Q  23 ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttg 111  Q
    ||||||| || |||||||||||| | ||| ||||||||||| ||||||||||| || |  ||||| || ||||||||||| || |||||    
T  40597863 ccattgggaataaattcataaacaagcaatggaacttctgtttctaaacaacaacctacaagttttaccacattcctatggttgatttg 40597775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 40573076 - 40573016
Alignment:
Q  23 ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaaga 83  Q
    ||||||| || ||||||||| || |  || ||||||||||||||||||||||| |||||||    
T  40573076 ccattgggaataaattcatacacaactaagggaacttctgtctctaaacaacagcccaaga 40573016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 40579533 - 40579445
Alignment:
Q  23 ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttg 111  Q
    ||||||| || |||||| ||||| |  || ||||||||||||||||||||||| ||||| |  || || ||||| |||||||| |||||    
T  40579533 ccattgggaataaattcgtaaacaagtaacggaacttctgtctctaaacaacaacccaaaatctttaccacatttctatgattgatttg 40579445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 37567806 - 37567745
Alignment:
Q  80 aagagtttgacaacattcctatgatttatttgagagagaacaactacctcattaatgaattg 141  Q
    ||||||||||| ||||||||||||||||||||||||| ||   | |||||||||||||||||    
T  37567806 aagagtttgaccacattcctatgatttatttgagagacaatgtccacctcattaatgaattg 37567745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 37572178 - 37572123
Alignment:
Q  23 ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccc 78  Q
    |||||| ||||||| ||||||||||||  |||||||||||| |||| |||||||||    
T  37572178 ccattgctaacaaactcataaaccaaccgaggaacttctgtttctagacaacaccc 37572123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 2015288 - 2015349
Alignment:
Q  50 aaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttg 111  Q
    |||||||||||||||||||||||||| |||||||| || || ||||| ||||| || |||||    
T  2015288 aaaggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttg 2015349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University