View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12520_low_25 (Length: 209)
Name: NF12520_low_25
Description: NF12520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12520_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 11 - 191
Target Start/End: Original strand, 42635753 - 42635933
Alignment:
| Q |
11 |
gtagcataggcacttcatattgaaaatgcgtctggagtacttcatattgaagatgcatctggagcctgacacaagtcaggatccaacactgacacgtatt |
110 |
Q |
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| T |
42635753 |
gtagcatagacacttcatactgaagatgcgtctagagcacttcatattgaagatgcgtctggagcctgacacaagtcagtatccaacactgacacatatt |
42635852 |
T |
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| Q |
111 |
gtataaaatcacttttatttttcttaaattattattatatgcggtctcctgtttctgtgcaagtgctttgtatcctataac |
191 |
Q |
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| T |
42635853 |
gtataaaatcacttttatttttcttaaattattattatgtgcggtctcttgtttctgtgcaagtgctttgtatcctataac |
42635933 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 191
Target Start/End: Complemental strand, 7228417 - 7228297
Alignment:
| Q |
68 |
tctggagcctgacacaa-gtcaggatccaacactgacacgtattgtataaaatcacttttatttttcttaaattattattatatgcggtctcctgtttct |
166 |
Q |
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| T |
7228417 |
tctggagcctgacacaaagtcagtatccaacactgacac--attgcactaaatcactttca-ttttcttaaattattatca-gtgttgtgtccagtgtct |
7228322 |
T |
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| Q |
167 |
gtgcaagtgctttgtatcctataac |
191 |
Q |
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| T |
7228321 |
gtgcaagtgctttgtagcctataac |
7228297 |
T |
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