View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12520_low_26 (Length: 204)

Name: NF12520_low_26
Description: NF12520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12520_low_26
NF12520_low_26
[»] chr6 (13 HSPs)
chr6 (2-180)||(27851181-27851360)
chr6 (21-176)||(20734145-20734300)
chr6 (36-191)||(2201133-2201288)
chr6 (36-191)||(22420981-22421136)
chr6 (2-181)||(25956549-25956729)
chr6 (71-180)||(34296963-34297072)
chr6 (86-159)||(19399822-19399895)
chr6 (21-163)||(25956715-25956856)
chr6 (86-176)||(18927888-18927977)
chr6 (102-162)||(31630622-31630681)
chr6 (96-163)||(27851129-27851195)
chr6 (2-45)||(19399885-19399928)
chr6 (2-48)||(27325487-27325533)
[»] scaffold1351 (1 HSPs)
scaffold1351 (21-180)||(1565-1724)
[»] chr8 (12 HSPs)
chr8 (21-180)||(21579900-21580059)
chr8 (21-180)||(29763562-29763720)
chr8 (70-180)||(42560221-42560331)
chr8 (21-164)||(41680832-41680975)
chr8 (36-153)||(32807279-32807396)
chr8 (21-172)||(39833870-39834023)
chr8 (21-180)||(18760534-18760693)
chr8 (21-162)||(38550086-38550226)
chr8 (94-162)||(27472391-27472458)
chr8 (94-163)||(1327119-1327187)
chr8 (94-180)||(3273212-3273297)
chr8 (21-77)||(22965748-22965804)
[»] chr3 (19 HSPs)
chr3 (21-180)||(31224648-31224807)
chr3 (21-180)||(15447694-15447850)
chr3 (21-161)||(31415403-31415543)
chr3 (60-191)||(6808175-6808306)
chr3 (22-180)||(11912921-11913079)
chr3 (2-112)||(18439845-18439955)
chr3 (9-137)||(12269590-12269718)
chr3 (21-163)||(49969963-49970105)
chr3 (2-112)||(1465419-1465529)
chr3 (11-112)||(49389639-49389740)
chr3 (3-60)||(20630147-20630204)
chr3 (94-163)||(20630191-20630259)
chr3 (94-181)||(1988924-1989012)
chr3 (94-163)||(18439941-18440009)
chr3 (21-153)||(49389772-49389905)
chr3 (2-45)||(49969934-49969977)
chr3 (86-132)||(40812050-40812096)
chr3 (94-136)||(30175304-30175346)
chr3 (94-163)||(12269529-12269597)
[»] scaffold0737 (1 HSPs)
scaffold0737 (21-180)||(6372-6531)
[»] scaffold0071 (1 HSPs)
scaffold0071 (21-180)||(14339-14498)
[»] chr7 (17 HSPs)
chr7 (21-180)||(30820950-30821109)
chr7 (21-180)||(36685944-36686103)
chr7 (36-191)||(9320412-9320567)
chr7 (36-180)||(11092751-11092895)
chr7 (21-161)||(38480236-38480376)
chr7 (36-180)||(11085013-11085157)
chr7 (22-180)||(15213699-15213857)
chr7 (55-180)||(15439318-15439444)
chr7 (2-112)||(9389705-9389815)
chr7 (2-112)||(17232634-17232744)
chr7 (21-163)||(8468313-8468454)
chr7 (94-163)||(14270138-14270206)
chr7 (94-162)||(45847735-45847802)
chr7 (21-163)||(17232507-17232648)
chr7 (2-93)||(8468440-8468524)
chr7 (21-181)||(37727619-37727780)
chr7 (86-180)||(11391871-11391966)
[»] chr5 (16 HSPs)
chr5 (21-180)||(12122215-12122374)
chr5 (21-180)||(21555073-21555232)
chr5 (21-180)||(21557739-21557898)
chr5 (36-191)||(24212382-24212537)
chr5 (36-191)||(35852637-35852792)
chr5 (21-180)||(31455689-31455851)
chr5 (22-179)||(36460170-36460327)
chr5 (21-180)||(31455076-31455238)
chr5 (2-172)||(5889114-5889283)
chr5 (25-180)||(30615759-30615913)
chr5 (22-134)||(17875214-17875326)
chr5 (2-96)||(21741557-21741651)
chr5 (21-163)||(5889269-5889410)
chr5 (94-163)||(29915167-29915235)
chr5 (3-45)||(21871627-21871669)
chr5 (3-45)||(21875907-21875949)
[»] chr2 (10 HSPs)
chr2 (21-180)||(24865464-24865623)
chr2 (21-180)||(22500988-22501147)
chr2 (21-180)||(22508922-22509081)
chr2 (21-180)||(7672252-7672405)
chr2 (82-180)||(2524423-2524521)
chr2 (21-180)||(6576373-6576532)
chr2 (89-153)||(24436258-24436321)
chr2 (85-134)||(22501146-22501195)
chr2 (85-134)||(22509080-22509129)
chr2 (86-134)||(24883665-24883713)
[»] scaffold0116 (4 HSPs)
scaffold0116 (2-181)||(47632-47812)
scaffold0116 (2-181)||(43712-43892)
scaffold0116 (21-163)||(43878-44019)
scaffold0116 (123-163)||(47798-47837)
[»] scaffold0395 (1 HSPs)
scaffold0395 (21-181)||(10894-11054)
[»] chr4 (16 HSPs)
chr4 (2-181)||(13844552-13844732)
chr4 (21-180)||(33186101-33186260)
chr4 (42-186)||(15880717-15880861)
chr4 (2-153)||(46642847-46642997)
chr4 (2-112)||(15099351-15099461)
chr4 (21-180)||(35812184-35812342)
chr4 (94-163)||(52873251-52873319)
chr4 (102-162)||(362213-362272)
chr4 (86-153)||(9923361-9923427)
chr4 (86-153)||(11479432-11479498)
chr4 (94-163)||(13844498-13844566)
chr4 (86-163)||(46642785-46642861)
chr4 (44-112)||(15190360-15190428)
chr4 (114-180)||(14185252-14185318)
chr4 (2-45)||(15868765-15868808)
chr4 (94-163)||(15868794-15868861)
[»] chr1 (14 HSPs)
chr1 (2-172)||(28194387-28194557)
chr1 (2-181)||(43697386-43697566)
chr1 (82-191)||(8885457-8885566)
chr1 (21-172)||(51274290-51274441)
chr1 (59-180)||(12328549-12328670)
chr1 (2-112)||(49261342-49261452)
chr1 (2-112)||(20636851-20636961)
chr1 (2-112)||(35981696-35981806)
chr1 (83-153)||(51326904-51326974)
chr1 (94-163)||(28194543-28194611)
chr1 (94-163)||(43543069-43543137)
chr1 (94-163)||(43697332-43697400)
chr1 (94-162)||(46382652-46382717)
chr1 (89-132)||(48301078-48301121)
[»] scaffold0599 (2 HSPs)
scaffold0599 (22-180)||(4615-4773)
scaffold0599 (22-180)||(197-355)
[»] scaffold0815 (1 HSPs)
scaffold0815 (21-149)||(483-611)
[»] scaffold0009 (2 HSPs)
scaffold0009 (2-112)||(85261-85371)
scaffold0009 (94-163)||(85207-85275)
[»] scaffold1137 (1 HSPs)
scaffold1137 (2-112)||(2300-2410)
[»] scaffold0434 (1 HSPs)
scaffold0434 (94-164)||(6769-6839)
[»] scaffold0080 (1 HSPs)
scaffold0080 (21-180)||(59300-59458)
[»] scaffold0061 (2 HSPs)
scaffold0061 (86-180)||(15421-15515)
scaffold0061 (86-180)||(24479-24573)
[»] scaffold0100 (1 HSPs)
scaffold0100 (86-163)||(36142-36218)
[»] scaffold0004 (1 HSPs)
scaffold0004 (94-163)||(362964-363032)
[»] scaffold0335 (1 HSPs)
scaffold0335 (86-177)||(869-959)
[»] scaffold0001 (1 HSPs)
scaffold0001 (86-176)||(76954-77042)
[»] scaffold0371 (1 HSPs)
scaffold0371 (86-180)||(3128-3221)
[»] scaffold0513 (1 HSPs)
scaffold0513 (94-163)||(10963-11031)
[»] scaffold0810 (2 HSPs)
scaffold0810 (94-154)||(3004-3063)
scaffold0810 (124-181)||(3066-3124)
[»] scaffold0802 (1 HSPs)
scaffold0802 (94-176)||(5455-5536)
[»] scaffold0075 (1 HSPs)
scaffold0075 (94-163)||(8379-8446)


Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 2 - 180
Target Start/End: Original strand, 27851181 - 27851360
Alignment:
Q  2 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaa-ttacaa 100  Q
    |||||||||||||||||| | ||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||| ||||||    
T  27851181 atcaaagtaaatcatattcagcacaacaacaagacaacatcatttaaacatacacaacaagtaaccatcaataataatcttcatatataacaaattacaa 27851280  T
Q  101 tttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  27851281 tttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaggtaaatcatcaatataaatcatctta 27851360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 20734300 - 20734145
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    |||||||||||||||||||| ||||||||||||| || ||||| |||| |||||||| || |||||||||||||||||||||||||||||||||||||||    
T  20734300 atcacaacagcaagacaacaccatttaaacatatgcagcaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacgtctttca 20734201  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcat 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20734200 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatataaatcat 20734145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 36 - 191
Target Start/End: Original strand, 2201133 - 2201288
Alignment:
Q  36 caacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttcacaatatataaatatt 135  Q
    ||||| |||||| |||||| || ||||| |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2201133 caacaccatttagacatatgcagcaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatataaatatt 2201232  T
Q  136 ttcacatttaatcatcaaagtaaatcatcaatattaatcatcttaacatctcctct 191  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2201233 ttcatatttaatcatcaaagtaaatcatcaatattaatcatcttaacatcttctct 2201288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 36 - 191
Target Start/End: Original strand, 22420981 - 22421136
Alignment:
Q  36 caacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttcacaatatataaatatt 135  Q
    ||||| |||||| |||||| |||||||| || | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22420981 caacaccatttagacatatgcaacaagtcactatcaataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatataaatatt 22421080  T
Q  136 ttcacatttaatcatcaaagtaaatcatcaatattaatcatcttaacatctcctct 191  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  22421081 ttcacatttaatcatcaaagtaaatcatcaatattaatcatctaaacatcttctct 22421136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 25956729 - 25956549
Alignment:
Q  2 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaat 101  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||| || |||     
T  25956729 atcaaagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacagcaagtaaccatcaataataatcttcatatataacatttgcaac 25956630  T
Q  102 ttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatcatcttaa 181  Q
    | |||||||||  |||||||| |||||| || |||||||||||||||||||| |||||||| ||||||| |||||||||||    
T  25956629 tccatatcaacaactttcacattatatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttaa 25956549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 71 - 180
Target Start/End: Complemental strand, 34297072 - 34296963
Alignment:
Q  71 aataatattcttcatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatatt 170  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  34297072 aataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatctaatcatcaaagtaaatcatcattatt 34296973  T
Q  171 aatcatctta 180  Q
    ||||||||||    
T  34296972 aatcatctta 34296963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 86 - 159
Target Start/End: Original strand, 19399822 - 19399895
Alignment:
Q  86 atataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaa 159  Q
    ||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19399822 atataaccattacaacttcatatcaacatctttcacaatatataaatattttcacatttaatcatcaaagtaaa 19399895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 25956856 - 25956715
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    |||||| ||||||| |||||||||  ||  || |||| ||||| | || ||| |||| || ||| ||| ||| ||||||| ||||||||| | |||||||    
T  25956856 atcacatcagcaaggcaacatcatcaaataatttacagcaagtcatcatcaacaataatcatcaaatacaaccattacaacttcatatcagcatctttca 25956757  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcat 163  Q
    ||||||||||||||| ||||| |||||||||||||||||||||    
T  25956756 caatatataaatattctcaca-ttaatcatcaaagtaaatcat 25956715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 86 - 176
Target Start/End: Original strand, 18927888 - 18927977
Alignment:
Q  86 atataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcat 176  Q
    ||||||| ||||||| ||||||||||| |||||||||||||||||||  |||||||||||||||||||  ||||||  ||| |||||||||    
T  18927888 atataaccattacaacttcatatcaacatctttcacaatatataaat-ctttcacatttaatcatcaacttaaatccacaacattaatcat 18927977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 31630681 - 31630622
Alignment:
Q  102 ttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatca 162  Q
    ||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  31630681 ttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatca 31630622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 27851129 - 27851195
Alignment:
Q  96 tacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 163  Q
    ||||| ||||||||| | |||||||||||||||||||||| ||||| |||| ||||||||||||||||    
T  27851129 tacaacttcatatcagcatctttcacaatatataaatattctcaca-ttaagcatcaaagtaaatcat 27851195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 19399885 - 19399928
Alignment:
Q  2 atcaaagtaaatcatatttatcacaacagcaagacaacatcatt 45  Q
    ||||||||||| |||||| |||||||||| ||||||||||||||    
T  19399885 atcaaagtaaaccatattcatcacaacagtaagacaacatcatt 19399928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 27325533 - 27325487
Alignment:
Q  2 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaa 48  Q
    |||||||||||||||||||||||||||| ||| | | ||||||||||    
T  27325533 atcaaagtaaatcatatttatcacaacaacaaaatagcatcatttaa 27325487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1351 (Bit Score: 124; Significance: 5e-64; HSPs: 1)
Name: scaffold1351
Description:

Target: scaffold1351; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 1565 - 1724
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    ||||||||| |||||||||||||||||||||||| || ||||| |||| |||||||| || || |||||||||||||||| |||||||||||||||||||    
T  1565 atcacaacaacaagacaacatcatttaaacatatgcatcaagtcaccatcaataataatcatcttatataacaattacaacttcatatcaacgtctttca 1664  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1665 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 1724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 5e-64; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 21580059 - 21579900
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||| |||||||| |  ||||||||||||||||||| |||||||||||||||||||    
T  21580059 atcacaacagcaagacaacatcatttaaacatatgcagcaagtcaccatcaataataattatcatatataacaattacaacttcatatcaacgtctttca 21579960  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21579959 caatatataaatattttcacatttaatcatcaaagtaaatcattaatattaatcatctta 21579900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 29763720 - 29763562
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    ||||||||||||||||| |||||||||||||||| || ||| | |||| | |||||| || ||||||||||||||||||| |||||||||||||||||||    
T  29763720 atcacaacagcaagacatcatcatttaaacatatgcagcaa-tcaccatcgataataatcatcatatataacaattacaacttcatatcaacgtctttca 29763622  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29763621 caatatataaatattttcacatttaatcatcaaagtaaatcattaatattaatcatctta 29763562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 42560331 - 42560221
Alignment:
Q  70 caataatattcttcatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatat 169  Q
    |||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42560331 caataataatcatcatatataacaattacaatttcatatcaacgtatttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcattat 42560232  T
Q  170 taatcatctta 180  Q
    |||||||||||    
T  42560231 taatcatctta 42560221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 41680975 - 41680832
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    ||||||||| ||||||| || ||||||||||||| || ||||| |||| |||||||| || |||||||||||||||||||||| |||||||  |||||||    
T  41680975 atcacaacaacaagacatcaccatttaaacatatgcagcaagtcaccatcaataataatcatcatatataacaattacaatttgatatcaatatctttca 41680876  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcatc 164  Q
    |||||||||||||||||||||||||||||||||  |||||||||    
T  41680875 caatatataaatattttcacatttaatcatcaatataaatcatc 41680832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 36 - 153
Target Start/End: Original strand, 32807279 - 32807396
Alignment:
Q  36 caacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttcacaatatataaatatt 135  Q
    ||||| |||||| |||||| || ||||| |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32807279 caacaccatttagacatatgcagcaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatataaatatt 32807378  T
Q  136 ttcacatttaatcatcaa 153  Q
    ||||||||||||||||||    
T  32807379 ttcacatttaatcatcaa 32807396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 39833870 - 39834023
Alignment:
Q  21 atcacaacagcaagacaa-catcatttaaacatatacaacaagtaaccaccaataatattcttcatatataa-caattacaatttcatatcaacgtcttt 118  Q
    |||||| ||||||| ||| ||||||||||||||||||| | |||||||| |||||||| ||||||||||||| || || ||| |||||||||||  | ||    
T  39833870 atcacatcagcaaggcaatcatcatttaaacatatacagcgagtaaccatcaataataatcttcatatataaccatttgcaacttcatatcaacaacatt 39833969  T
Q  119 cacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaa 172  Q
    |||  |||||| || |||||||||||||||||||| |||||||| |||||||||    
T  39833970 cacgttatatagatcttttcacatttaatcatcaacgtaaatcaacaatattaa 39834023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 18760534 - 18760693
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    ||||||| |||||| || || |||| ||  |||| || ||||| | || ||| |||| || ||| ||||||| |||| || ||||||||||| |||||||    
T  18760534 atcacaatagcaaggcatcaccattaaataatatgcagcaagtcaacatcaacaataatcatcaaatataaccattataacttcatatcaacatctttca 18760633  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    |||||||||||| |||||||||||||||||| |  |||| |  |||||||||||||||||    
T  18760634 caatatataaatcttttcacatttaatcatctacttaaacccacaatattaatcatctta 18760693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 38550226 - 38550086
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    |||||| ||||||||||||| |||  ||  || |||| ||||| | || ||| |||| || ||  ||| ||| ||||||| ||||||||||| |||||||    
T  38550226 atcacatcagcaagacaacaccatcaaataatttacagcaagtcaacatcaacaataatcatctaatacaaccattacaacttcatatcaacatctttca 38550127  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatca 162  Q
    ||||||||||||||| ||||| ||||||||||||||||||||    
T  38550126 caatatataaatattctcaca-ttaatcatcaaagtaaatca 38550086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 27472458 - 27472391
Alignment:
Q  94 attacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatca 162  Q
    ||||||| ||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  27472458 attacaacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatca 27472391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 1327187 - 1327119
Alignment:
Q  94 attacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 163  Q
    ||||||| ||||||||||| || ||||||||||||||||||| ||||| |||||||||||||||||||||    
T  1327187 attacaacttcatatcaacatcgttcacaatatataaatattctcaca-ttaatcatcaaagtaaatcat 1327119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 3273212 - 3273297
Alignment:
Q  94 attacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    ||||||| |||||| |||| | |||||||||||||||||  |||||||||||||||||||  ||||||   || |||||||||||||    
T  3273212 attacaacttcataccaacatttttcacaatatataaat-ctttcacatttaatcatcaacttaaatccataacattaatcatctta 3273297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 22965748 - 22965804
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataata 77  Q
    |||| ||||||||||||||| ||||||||||||| || ||| | |||| ||||||||    
T  22965748 atcataacagcaagacaacaccatttaaacatatgcatcaaatcaccatcaataata 22965804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 5e-64; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 31224807 - 31224648
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||| |||||||| || ||||||||||||||||||| |||||||||||||||||||    
T  31224807 atcacaacagcaagacaacatcatttaaacatatgcagcaagtcaccatcaataataatcatcatatataacaattacaacttcatatcaacgtctttca 31224708  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31224707 cattatataaatattttcacatttaatcatcaaagtaaaacatcaatattaatcatctta 31224648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 15447850 - 15447694
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||| |||||||| ||   ||||||||||||||||| |||||||||||||||||||    
T  15447850 atcacaacagcaagacaacatcatttaaacatatgcatcaagtcaccatcaataataatc---atatataacaattacaacttcatatcaacgtctttca 15447754  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15447753 cattatatgaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 15447694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 31415403 - 31415543
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||| |||||||| || ||||||||||||||||||| |||||||||||||||||||    
T  31415403 atcacaacagcaagacaacatcatttaaacatatgcagcaagtcaccatcaataataatcatcatatataacaattacaacttcatatcaacgtctttca 31415502  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatc 161  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31415503 caatatataaatattttcacatttaatcatcaaagtaaatc 31415543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 60 - 191
Target Start/End: Original strand, 6808175 - 6808306
Alignment:
Q  60 aagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaa 159  Q
    |||| |||| |||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6808175 aagtcaccatcaataataatcattatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaa 6808274  T
Q  160 tcatcaatattaatcatcttaacatctcctct 191  Q
    ||||||||||||||||| ||||||||||||||    
T  6808275 tcatcaatattaatcatattaacatctcctct 6808306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 22 - 180
Target Start/End: Original strand, 11912921 - 11913079
Alignment:
Q  22 tcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttcac 121  Q
    ||||||| ||||| ||||| |||| ||  |||| || ||||| | || |||||||| |  ||||||||||||||||||||||||||||||||||||||||    
T  11912921 tcacaaccgcaaggcaacaccattaaataatatgcatcaagtcaacatcaataataataatcatatataacaattacaatttcatatcaacgtctttcac 11913020  T
Q  122 aatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11913021 aatatataaatattttcacatttaatcatcaaagtaaatcatcattattaatcatctta 11913079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 18439955 - 18439845
Alignment:
Q  2 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaat 101  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || |||     
T  18439955 atcaaagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccatcaataataatcttcatatataacatttgcaac 18439856  T
Q  102 ttcatatcaac 112  Q
    | |||||||||    
T  18439855 tacatatcaac 18439845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 12269590 - 12269718
Alignment:
Q  9 taaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatat 108  Q
    ||||||||||| || ||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||| ||| || ||||| |||||||    
T  12269590 taaatcatattcatgacaacagcaaggcagcatcatttaaacatatacaacaagtaaccaccgataatattcttcatatgtaaaaaatacaacttcatat 12269689  T
Q  109 caacgtctttcacaatatataaatatttt 137  Q
    ||||  |||||||||||||||||| ||||    
T  12269690 caacaactttcacaatatataaatctttt 12269718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 49970105 - 49969963
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    |||||||||||||| ||  | |||| ||  |||| || ||||| | || ||| |||| || ||| ||||||| ||||||| ||||||||||| |||||||    
T  49970105 atcacaacagcaaggcagtaccattaaataatatgcagcaagtcaacatcaacaataatcatcaaatataaccattacaacttcatatcaacatctttca 49970006  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcat 163  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  49970005 caatatataaatattttcacatttaatcatcaaagtaaatcat 49969963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 1465529 - 1465419
Alignment:
Q  2 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaat 101  Q
    |||||||| ||||||||| |||||  |||||||||||||||||||||||||||| | |||||||||| || ||||| ||||||| |||||||||| |||     
T  1465529 atcaaagtcaatcatattcatcacggcagcaagacaacatcatttaaacatatagagcaagtaaccatcattaataatcttcatgtataacaatttcaac 1465430  T
Q  102 ttcatatcaac 112  Q
    |||||||||||    
T  1465429 ttcatatcaac 1465419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 49389740 - 49389639
Alignment:
Q  11 aatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatca 110  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| |||  ||||||  ||||||| |||||||||| ||| |||||| ||    
T  49389740 aatcatattcatcacgacagcaagacaacatcatttaaacatatacaataagtacccattaataatgatcttcatgtataacaatttcaacttcatacca 49389641  T
Q  111 ac 112  Q
    ||    
T  49389640 ac 49389639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 20630204 - 20630147
Alignment:
Q  3 tcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaaca 60  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  20630204 tcaaagtaaatcatattcattacaacagcaagacaacatcatttaaacatatacaaca 20630147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 20630259 - 20630191
Alignment:
Q  94 attacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 163  Q
    ||||||| ||||||||||| |||||||||||||||||||||| ||||| |||||| ||||||||||||||    
T  20630259 attacaacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcgtcaaagtaaatcat 20630191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 94 - 181
Target Start/End: Complemental strand, 1989012 - 1988924
Alignment:
Q  94 attacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatcatcttaa 181  Q
    ||||||| |||||||||||  |||||||| |||||| || |||||||||||||||||||| || ||||| ||||||| |||||||||||    
T  1989012 attacaacttcatatcaacaactttcacattatatagatcttttcacatttaatcatcaacgtgaatcaacaatattaaatcatcttaa 1988924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 18440009 - 18439941
Alignment:
Q  94 attacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 163  Q
    ||||||| ||||||||| | |||||||||||||||| ||||| ||||| |||||||||||||||||||||    
T  18440009 attacaacttcatatcatcatctttcacaatatatagatattctcaca-ttaatcatcaaagtaaatcat 18439941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 49389905 - 49389772
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    |||||| ||||||| ||||| |||  ||  || |||| ||||| | || ||| |||| || ||| ||||||||||||||| |||||||||||  ||| ||    
T  49389905 atcacatcagcaaggcaacaccatcaaataatttacagcaagtcaacatcaacaataatcatcaaatataacaattacaacttcatatcaacaactt-ca 49389807  T
Q  121 caatatat--aaatattttcacatttaatcatcaa 153  Q
    ||||||||  |||||||||||||||||||||||||    
T  49389806 caatatatctaaatattttcacatttaatcatcaa 49389772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 49969977 - 49969934
Alignment:
Q  2 atcaaagtaaatcatatttatcacaacagcaagacaacatcatt 45  Q
    |||||||||||||||||| |||||||||| ||||||||||||||    
T  49969977 atcaaagtaaatcatattcatcacaacaggaagacaacatcatt 49969934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 40812050 - 40812096
Alignment:
Q  86 atataacaattacaatttcatatcaacgtctttcacaatatataaat 132  Q
    ||||||| ||||||| ||||||||||| |||||||||||||||||||    
T  40812050 atataaccattacaacttcatatcaacatctttcacaatatataaat 40812096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 136
Target Start/End: Complemental strand, 30175346 - 30175304
Alignment:
Q  94 attacaatttcatatcaacgtctttcacaatatataaatattt 136  Q
    ||||||| ||||||||||| ||||||||| |||||||||||||    
T  30175346 attacaacttcatatcaacatctttcacagtatataaatattt 30175304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 12269529 - 12269597
Alignment:
Q  94 attacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 163  Q
    ||||||| |||||||||||||| |||| ||| ||||||| || ||||| |||||||||||  ||||||||    
T  12269529 attacaacttcatatcaacgtccttcaaaatttataaatcttctcaca-ttaatcatcaacttaaatcat 12269597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 6531 - 6372
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    ||||||| |||||||||||| ||||||||||||| || ||||| |||| |||||||| || |||||||||||||||||||||||||||||||||||||||    
T  6531 atcacaatagcaagacaacaccatttaaacatatgcagcaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacgtctttca 6432  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  6431 caatatataaatattttcacatttaatcatcaaagtaaatcattattattaatcatctta 6372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 14339 - 14498
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||| |||||||| || || |||||||||||||||| |||||||||||||||||||    
T  14339 atcacaacagcaagacaacatcatttaaacatatgcatcaagtcaccatcaataataatcatcttatataacaattacaacttcatatcaacgtctttca 14438  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14439 cattatatgaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 14498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 1e-61; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 30821109 - 30820950
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    ||||||||| |||||||||||||||||||||||| || ||||| |||| |||||||| || ||||||||||||||||||| ||||||||||||| |||||    
T  30821109 atcacaacaacaagacaacatcatttaaacatatgcagcaagttaccatcaataataatcatcatatataacaattacaacttcatatcaacgtatttca 30821010  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30821009 caatatataaatattttcacatttaatcatcaaagtaaaacatcaatattaatcatctta 30820950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 36686103 - 36685944
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||| |||||||| || |||||||||||||||| || ||||||||| |||||||||    
T  36686103 atcacaacagcaagacaacatcatttaaacatatgcagcaagtcaccatcaataataatcatcatatataacaattaaaacttcatatcagcgtctttca 36686004  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36686003 caatatataaatattttcacatttaatcatcaaagtaaaacatcaatattaatcatctta 36685944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 36 - 191
Target Start/End: Complemental strand, 9320567 - 9320412
Alignment:
Q  36 caacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttcacaatatataaatatt 135  Q
    ||||| |||||| |||||| |||||||| |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9320567 caacaccatttagacatatgcaacaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatataaatatt 9320468  T
Q  136 ttcacatttaatcatcaaagtaaatcatcaatattaatcatcttaacatctcctct 191  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||    
T  9320467 ttcacatttaatcatcaaaataaatcatcaatattaatcatcttaatatcttctct 9320412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 36 - 180
Target Start/End: Original strand, 11092751 - 11092895
Alignment:
Q  36 caacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttcacaatatataaatatt 135  Q
    ||||| ||||||||| ||| |||||||| |||| |||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11092751 caacaccatttaaacgtatgcaacaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacatctttcacaatatataaatatt 11092850  T
Q  136 ttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  11092851 ttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 11092895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 38480236 - 38480376
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    ||||||||||||||||||||||||||||| |||| || ||||| |||| |||||||| || ||||||||||||||||||| |||||||||||||||||||    
T  38480236 atcacaacagcaagacaacatcatttaaatatatgcagcaagtcaccatcaataataatcatcatatataacaattacaacttcatatcaacgtctttca 38480335  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatc 161  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  38480336 caatatataaatattttcacatttaatcatcaaagtaaatc 38480376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 36 - 180
Target Start/End: Original strand, 11085013 - 11085157
Alignment:
Q  36 caacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttcacaatatataaatatt 135  Q
    ||||| ||||||| | ||| || ||||| |||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11085013 caacaccatttaatcgtatgcagcaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatataaatagt 11085112  T
Q  136 ttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  11085113 ttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 11085157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 22 - 180
Target Start/End: Original strand, 15213699 - 15213857
Alignment:
Q  22 tcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttcac 121  Q
    ||||||| ||||| ||||| |||| ||  |||| || ||||| | || |||||||| || |||||||||||||||||||||||||||||| |||||||||    
T  15213699 tcacaaccgcaaggcaacaccattaaataatatgcagcaagtcaacatcaataataatcatcatatataacaattacaatttcatatcaatgtctttcac 15213798  T
Q  122 aatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15213799 aatatataaatattttcacatttaatcatcaaagtaaatcatcattattaatcatctta 15213857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 55 - 180
Target Start/End: Original strand, 15439318 - 15439444
Alignment:
Q  55 acaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaa 154  Q
    |||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||  ||||||||   |||| || ||||||||||||||||||||     
T  15439318 acaacaagtaaccatcaataataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaac 15439417  T
Q  155 gtaaatcatcaatatt-aatcatctta 180  Q
    |||||||| ||||||| ||||||||||    
T  15439418 gtaaatcaacaatattaaatcatctta 15439444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 9389815 - 9389705
Alignment:
Q  2 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaat 101  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||| || ||||| ||||||| |||| ||||| |||     
T  9389815 atcaaagtcaatcatattcatcacgacagcaagacaacatcatttaaacatatacagcaagtaaccatcattaataatcttcatgtatatcaatttcaac 9389716  T
Q  102 ttcatatcaac 112  Q
    |||||||||||    
T  9389715 ttcatatcaac 9389705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 17232634 - 17232744
Alignment:
Q  2 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaat 101  Q
    |||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||| || ||||| ||||||||| ||||| || |||     
T  17232634 atcaaagtaaatcatattcatcacaacagcatgacatcatcatttaaacatatacaacaagtaaccatcattaataatcttcatatgtaacatttgcaac 17232733  T
Q  102 ttcatatcaac 112  Q
    | |||||||||    
T  17232734 tccatatcaac 17232744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 8468313 - 8468454
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    |||||| ||||||| ||||| |||| ||  || |||| ||||| | || ||| |||| || ||  ||| ||| ||||||| ||||||||||| |||||||    
T  8468313 atcacatcagcaaggcaacaccattaaataatttacagcaagtcaacatcaacaataatcatctaatacaaccattacaacttcatatcaacatctttca 8468412  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcat 163  Q
    ||||||||||||||| ||||| |||||||||||||||||||||    
T  8468413 caatatataaatattatcaca-ttaatcatcaaagtaaatcat 8468454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 14270206 - 14270138
Alignment:
Q  94 attacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 163  Q
    ||||||| ||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  14270206 attacaacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatcat 14270138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 45847802 - 45847735
Alignment:
Q  94 attacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatca 162  Q
    ||||||| ||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  45847802 attacaacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatca 45847735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 17232507 - 17232648
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    |||||| ||||||| ||||| |||  ||  ||||||| ||||| | || ||| |||| || ||  ||| ||| ||| ||| ||||||||||| |||||||    
T  17232507 atcacatcagcaaggcaacaccatcaaataatatacagcaagtcaacagcaacaataatcatctaatacaaccattccaacttcatatcaacatctttca 17232606  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcat 163  Q
    ||||||||||||||| ||||| |||||||||||||||||||||    
T  17232607 caatatataaatattctcaca-ttaatcatcaaagtaaatcat 17232648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 8468440 - 8468524
Alignment:
Q  2 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataaca 93  Q
    |||||||||||||||||| |||||||||||||       |||||||||||||||||||||||||||| || ||||| ||||||||| |||||    
T  8468440 atcaaagtaaatcatattcatcacaacagcaa-------tcatttaaacatatacaacaagtaaccatcattaataatcttcatatgtaaca 8468524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 181
Target Start/End: Complemental strand, 37727780 - 37727619
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    |||||| ||||||| ||||| |||  ||  || |||| ||||| | || ||| |||| || ||| ||| ||| ||||||| |||||||| ||  ||||||    
T  37727780 atcacatcagcaaggcaacaccatcaaataatttacagcaagtcaacatcaacaataatcatcaaatacaaccattacaacttcatatctacaactttca 37727681  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatcatcttaa 181  Q
    || |||||| || |||||||||||||||||||| ||||| || ||||||| |||||||||||    
T  37727680 cattatatagatcttttcacatttaatcatcaacgtaaagcaacaatattaaatcatcttaa 37727619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 11391966 - 11391871
Alignment:
Q  86 atataacaattacaatttcatatcaacgtctttcacaatatataaatattt-tcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    ||||||| ||||||| ||| ||| | | ||||||||||||||||||| |||   |||||||||||||||  ||||||  ||| |||||||||||||    
T  11391966 atataaccattacaacttcttatgagcatctttcacaatatataaatctttcgtacatttaatcatcaatttaaatccacaacattaatcatctta 11391871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 1e-61; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 12122374 - 12122215
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    ||||||||||||||||| |||||||||||||||| |  ||||| |||| |||||||| || ||||||||||||||||||| |||||||||||||||||||    
T  12122374 atcacaacagcaagacatcatcatttaaacatatgccgcaagtcaccatcaataataatcatcatatataacaattacaacttcatatcaacgtctttca 12122275  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12122274 caatatataaatattttcacatttaatcatcaaagtaaatcattaatattaatcatctta 12122215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 21555232 - 21555073
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||| |||||||| || ||||||||||||||||||| || || |||||||||||||    
T  21555232 atcacaacagcaagacaacatcatttaaacatatgcagcaagtcaccatcaataataatcatcatatataacaattacaactttatgtcaacgtctttca 21555133  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  21555132 caatatataaatattttcacatttaatcatcaaactaaaacatcaatattaatcatctta 21555073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 21557898 - 21557739
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    |||| ||||||||||||||||||||||||||||| || ||||| || | |||||||| || ||||||||||||||||||| |||||||||||||||||||    
T  21557898 atcataacagcaagacaacatcatttaaacatatgcagcaagtcactatcaataataatcatcatatataacaattacaacttcatatcaacgtctttca 21557799  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  21557798 caatatataaatattttcacatttaatcatcaaactaaaacatcaatattaatcatctta 21557739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 36 - 191
Target Start/End: Original strand, 24212382 - 24212537
Alignment:
Q  36 caacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttcacaatatataaatatt 135  Q
    |||||||||||| |||||| || ||||| |||| ||||| || || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24212382 caacatcatttagacatatgcagcaagtcaccatcaatattaatcatcatatataacaattacaacttcatatcaacgtctttcacaatatataaatatt 24212481  T
Q  136 ttcacatttaatcatcaaagtaaatcatcaatattaatcatcttaacatctcctct 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24212482 ttcacatttaatcatcaaagtaaatcatcaatattaatcatcttaacatcttctct 24212537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 36 - 191
Target Start/End: Original strand, 35852637 - 35852792
Alignment:
Q  36 caacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttcacaatatataaatatt 135  Q
    ||||| |||||| |||||| || ||||  |||| |||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35852637 caacaccatttagacatatgcagcaagccaccatcaataataatcatcgtatataacaattacaatttcatatcaacgtctttcacaatatataaatatt 35852736  T
Q  136 ttcacatttaatcatcaaagtaaatcatcaatattaatcatcttaacatctcctct 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35852737 ttcacatttaatcatcaaagtaaatcatcaatattaatcatcttaacatcttctct 35852792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 31455689 - 31455851
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattct---tcatatataacaattacaatttcatatcaacgtctt 117  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||| |||||||| ||    |||| |||||| ||||||| ||||||||||||| ||    
T  31455689 atcacaacagcaagacaacatcatttaaacatatgcagcaagtcaccatcaataataatcaatatcatttataacgattacaacttcatatcaacgtttt 31455788  T
Q  118 tcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31455789 tcacaatatataaatattttcacatttaatcatcaaagtaaaacatcaatattaatcatctta 31455851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 22 - 179
Target Start/End: Original strand, 36460170 - 36460327
Alignment:
Q  22 tcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttcac 121  Q
    ||||||| ||||||||||| |||| ||  |||| || ||||| | ||  ||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  36460170 tcacaaccgcaagacaacaccattaaataatatgcagcaagtcaacattaataataatcatcatatataacaattacaatttcatatcaacgtctttcac 36460269  T
Q  122 aatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctt 179  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36460270 aatatataaatattttcacatttaatcatcaaagtaaatcatcattattaatcatctt 36460327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 31455076 - 31455238
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattct---tcatatataacaattacaatttcatatcaacgtctt 117  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||| |||||||| ||    |||| |||||| ||||||| || |||||||||| ||    
T  31455076 atcacaacagcaagacaacatcatttaaacatatgcatcaagtcaccatcaataataatcaatatcatttataacgattacaacttaatatcaacgtttt 31455175  T
Q  118 tcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31455176 tcacaatatataaatattttcacatttaatcatcaaagtaaaacatcaatattaatcatctta 31455238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 2 - 172
Target Start/End: Complemental strand, 5889283 - 5889114
Alignment:
Q  2 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaat 101  Q
    |||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| |||||||||| |||||||| ||||||| |||||||||| |||     
T  5889283 atcaaagtaaatcatattcatcacgacag-aagacaacatcatttaaacatatacagcaagtaaccatcaataataatcttcatgtataacaattgcaac 5889185  T
Q  102 ttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaa 172  Q
    | |||||||||  |||||||| |||||| || |||||||||||||||||||| |||||||| |||||||||    
T  5889184 tacatatcaacaactttcacattatatagatcttttcacatttaatcatcaacgtaaatcaacaatattaa 5889114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 25 - 180
Target Start/End: Original strand, 30615759 - 30615913
Alignment:
Q  25 caacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttcacaat 124  Q
    ||||||||||||| |||| ||||||||||| || ||||| |||| || ||||| || |||  |||||||||||||| |||||||||||||||||||||||    
T  30615759 caacagcaagacatcatcgtttaaacatatgcagcaagtcaccatcattaataatcatcaattataacaattacaacttcatatcaacgtctttcacaat 30615858  T
Q  125 atataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    |||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  30615859 atat-aatattttcacatttaatcataaaagtaaattatcaatattaatcatctta 30615913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 17875214 - 17875326
Alignment:
Q  22 tcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttcac 121  Q
    |||||||||||||| || ||||||||||||||| || ||||| |||| |||||||| || |||||||||||||||| || |||||||||||||||||  |    
T  17875214 tcacaacagcaagataatatcatttaaacatatgcagcaagtcaccatcaataataatcatcatatataacaattagaacttcatatcaacgtctttatc 17875313  T
Q  122 aatatataaatat 134  Q
    | |||||||||||    
T  17875314 attatataaatat 17875326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 21741651 - 21741557
Alignment:
Q  2 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaatt 96  Q
    |||||| | ||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| ||||||||||    
T  21741651 atcaaattcaatcatatacatcacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatgtataacaatt 21741557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 5889410 - 5889269
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    |||||| ||||||| ||||| |||  ||  || |||| ||||| | || ||| |||| || ||| ||| ||| ||||||| ||||||||| | |||||||    
T  5889410 atcacatcagcaaggcaacaccatcaaataatttacagcaagtcatcatcaacaataatcatcaaatacaaccattacaacttcatatcagcatctttca 5889311  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcat 163  Q
    ||||||||||||||| ||||| |||||||||||||||||||||    
T  5889310 caatatataaatattctcaca-ttaatcatcaaagtaaatcat 5889269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 29915235 - 29915167
Alignment:
Q  94 attacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 163  Q
    ||||||| ||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||| |||||    
T  29915235 attacaacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaagtagatcat 29915167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 21871669 - 21871627
Alignment:
Q  3 tcaaagtaaatcatatttatcacaacagcaagacaacatcatt 45  Q
    ||||||||||||||||| ||||||||| ||||||| |||||||    
T  21871669 tcaaagtaaatcatattcatcacaacaacaagacagcatcatt 21871627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 21875949 - 21875907
Alignment:
Q  3 tcaaagtaaatcatatttatcacaacagcaagacaacatcatt 45  Q
    ||||||||||||||||| ||||||||| ||||||| |||||||    
T  21875949 tcaaagtaaatcatattcatcacaacaacaagacagcatcatt 21875907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 1e-61; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 24865623 - 24865464
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    ||||||| |||||||||||||||||||||||||| || ||||| |||| |||||||| || || |||||||||||||||| ||||||||||| |||||||    
T  24865623 atcacaatagcaagacaacatcatttaaacatatgcatcaagtcaccatcaataataatcatcttatataacaattacaacttcatatcaacatctttca 24865524  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24865523 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 24865464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 22500988 - 22501147
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    ||||||| ||||||||| |||||||||||||||| || ||||| |||| ||||| || || || |||||||||||||||| |||||||||||||||||||    
T  22500988 atcacaatagcaagacagcatcatttaaacatatgcagcaagttaccatcaatattaatcatcttatataacaattacaacttcatatcaacgtctttca 22501087  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22501088 cattatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 22501147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 22508922 - 22509081
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    ||||||| ||||||||| |||||||||||||||| || ||||| |||| ||||| || || || |||||||||||||||| |||||||||||||||||||    
T  22508922 atcacaatagcaagacagcatcatttaaacatatgcagcaagttaccatcaatattaatcatcttatataacaattacaacttcatatcaacgtctttca 22509021  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22509022 cattatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 22509081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 7672405 - 7672252
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    ||||||||||||||||| |||||||||||| ||| || ||||| |||| |||||||| || || |||||||||| |      ||||||||||||||||||    
T  7672405 atcacaacagcaagacagcatcatttaaacgtatgcatcaagtcaccatcaataataatcatcttatataacaact------tcatatcaacgtctttca 7672312  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7672311 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 7672252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 82 - 180
Target Start/End: Complemental strand, 2524521 - 2524423
Alignment:
Q  82 tcatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2524521 tcatatgtaacaattacaatttgatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 2524423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 6576373 - 6576532
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    ||||||| |||||| || || |||| ||  |||| || ||||| | || ||| |||| || ||| ||||||| ||||||| ||||||||||| |||||||    
T  6576373 atcacaatagcaaggcagcaccattaaataatatgcagcaagtcaacatcaacaataatcatcaaatataaccattacaacttcatatcaacatctttca 6576472  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    |||||||||||| ||||||| ||||||||||||  ||||||  ||| |||||||||||||    
T  6576473 caatatataaattttttcacttttaatcatcaacttaaatccacaacattaatcatctta 6576532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 24436258 - 24436321
Alignment:
Q  89 taacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaa 153  Q
    |||| ||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||    
T  24436258 taaccattacaatttcatatcaacatctttcacaatatataaat-ctttcacatttaatcatcaa 24436321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 22501146 - 22501195
Alignment:
Q  85 tatataacaattacaatttcatatcaacgtctttcacaatatataaatat 134  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  22501146 tatataacaattacaacttcatatcaacgtctttcacattatataaatat 22501195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 22509080 - 22509129
Alignment:
Q  85 tatataacaattacaatttcatatcaacgtctttcacaatatataaatat 134  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  22509080 tatataacaattacaacttcatatcaacgtctttcacattatataaatat 22509129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 24883665 - 24883713
Alignment:
Q  86 atataacaattacaatttcatatcaacgtctttcacaatatataaatat 134  Q
    ||||||| ||||||| ||||||||||| |||||||||||||||||||||    
T  24883665 atataaccattacaacttcatatcaacatctttcacaatatataaatat 24883713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 117; Significance: 8e-60; HSPs: 4)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 47812 - 47632
Alignment:
Q  2 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaat 101  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || |||     
T  47812 atcaaagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccatcaataataatcttcatatataacatttgcaac 47713  T
Q  102 ttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatcatcttaa 181  Q
    | |||||||||  |||||||| |||||| || |||||||||||||||||||| |||||||| ||||||| |||||||||||    
T  47712 tacatatcaacaactttcacattatatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttaa 47632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 43892 - 43712
Alignment:
Q  2 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaat 101  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||| || |||     
T  43892 atcaaagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacagcaagtaaccatcaataataatcttcatatataacatttgcaac 43793  T
Q  102 ttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatcatcttaa 181  Q
    | |||||||||  |||||||| |||||| || |||||||||||||||||||| |||||||| ||||||| |||||||||||    
T  43792 tccatatcaacaactttcacattatatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttaa 43712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 44019 - 43878
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    |||||| ||||||| |||||||||  ||  || |||| ||||| | || ||| |||| || ||| ||| ||| ||||||| ||||||||| | |||||||    
T  44019 atcacatcagcaaggcaacatcatcaaataatttacagcaagtcatcatcaacaataatcatcaaatacaaccattacaacttcatatcagcatctttca 43920  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcat 163  Q
    ||||||||||||||| ||||| |||||||||||||||||||||    
T  43919 caatatataaatattctcaca-ttaatcatcaaagtaaatcat 43878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 47837 - 47798
Alignment:
Q  123 atatataaatattttcacatttaatcatcaaagtaaatcat 163  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  47837 atatataaatattctcacatt-aatcatcaaagtaaatcat 47798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 21 - 181
Target Start/End: Original strand, 10894 - 11054
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    |||| ||||||||||||||||||||||||||||| || ||||| || | |||||||| || |||||||||||||||| || |||||||||||||||||||    
T  10894 atcaaaacagcaagacaacatcatttaaacatatgcagcaagtcacaatcaataataatcatcatatataacaattaaaaattcatatcaacgtctttca 10993  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatcttaa 181  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  10994 caatatataaatattttcacatttaatcatcatagtaaatcatcaacattaatcatcttaa 11054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 2 - 181
Target Start/End: Original strand, 13844552 - 13844732
Alignment:
Q  2 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaat 101  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || |||     
T  13844552 atcaaagtaaatcatattcatcacaacagtaagacaacatcatttaaacatatacaacaagtaaccatcaataataatcttcatatataacatttgcaac 13844651  T
Q  102 ttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatcatcttaa 181  Q
    | |||||||||  |||||||| |||||| ||||||||||||||||||||||| ||||||||  |||||| |||||||||||    
T  13844652 tccatatcaacaactttcacattatatagatattttcacatttaatcatcaacgtaaatcaataatattaaatcatcttaa 13844732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 33186101 - 33186260
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    ||||||||| ||||||| ||||||||||||| || || ||||| |||| |||||||| || ||||||||||||||||||| |||||||||||||||||||    
T  33186101 atcacaacaacaagacatcatcatttaaacaaatgcagcaagtcaccatcaataataatcatcatatataacaattacaacttcatatcaacgtctttca 33186200  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
     |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33186201 taatatataaatattttcacatttaatcatcaaagtaaatcattaatattaatcatctta 33186260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 42 - 186
Target Start/End: Original strand, 15880717 - 15880861
Alignment:
Q  42 catttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcaca 141  Q
    |||||| ||||||  | ||||| |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15880717 catttagacatatgtagcaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcaca 15880816  T
Q  142 tttaatcatcaaagtaaatcatcaatattaatcatcttaacatct 186  Q
    |||||| |||||||||||||||||||||| |||||||||||||||    
T  15880817 tttaataatcaaagtaaatcatcaatattgatcatcttaacatct 15880861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 46642847 - 46642997
Alignment:
Q  2 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaat 101  Q
    |||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  46642847 atcaaattaaatcatattcatcacaacagcaaggcagcatcatttaaacatatacaacaagtaaccaccaataatattcttcatatgtaacaattacaac 46642946  T
Q  102 ttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaa 153  Q
    ||||||| |||  |||||||||||||||||| ||||| || |||||||||||    
T  46642947 ttcatattaacaactttcacaatatataaatcttttcgca-ttaatcatcaa 46642997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 15099351 - 15099461
Alignment:
Q  2 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaat 101  Q
    |||||||| ||||||||| || || |||||||||||||||| |||||||||||||| |||||||||| || ||||| |||| || |||||||||| |||     
T  15099351 atcaaagtcaatcatattcattacgacagcaagacaacatcttttaaacatatacagcaagtaaccatcattaataatctttatgtataacaatttcaac 15099450  T
Q  102 ttcatatcaac 112  Q
    |||||||||||    
T  15099451 ttcatatcaac 15099461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 35812342 - 35812184
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    |||||||||||||||||||||||||  |  |||| || ||||| | || ||| |||| || ||  ||||||| ||||||| ||||||||||| |||||||    
T  35812342 atcacaacagcaagacaacatcattagataatatgcagcaagtcaacatcaacaataatcatccaatataaccattacaacttcatatcaacatctttca 35812243  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    ||||||||||||  || ||||||||||||||||  ||||||  ||| |||||||||||||    
T  35812242 caatatataaat-cttccacatttaatcatcaacttaaatccacaacattaatcatctta 35812184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 52873319 - 52873251
Alignment:
Q  94 attacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 163  Q
    ||||||| ||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  52873319 attacaacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatcat 52873251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 362213 - 362272
Alignment:
Q  102 ttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatca 162  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  362213 ttcatatcaacgtctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatca 362272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 9923361 - 9923427
Alignment:
Q  86 atataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaa 153  Q
    ||||||| ||||||| ||||||||||| |||||||||||||||||||  |||||||||||||||||||    
T  9923361 atataaccattacaacttcatatcaacatctttcacaatatataaat-ctttcacatttaatcatcaa 9923427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 11479498 - 11479432
Alignment:
Q  86 atataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaa 153  Q
    ||||||| ||||||| ||||||||||| |||||||||||||||||||  |||||||||||||||||||    
T  11479498 atataaccattacaacttcatatcaacatctttcacaatatataaat-ctttcacatttaatcatcaa 11479432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 13844498 - 13844566
Alignment:
Q  94 attacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 163  Q
    ||||||| ||||||||| | |||||||||||||||||||||| ||||| ||||| |||||||||||||||    
T  13844498 attacaacttcatatcagcatctttcacaatatataaatattctcaca-ttaataatcaaagtaaatcat 13844566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 46642785 - 46642861
Alignment:
Q  86 atataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 163  Q
    ||||||| ||||||| ||||||||||||||||||||| | ||||||| || ||||| |||||||||||| ||||||||    
T  46642785 atataaccattacaacttcatatcaacgtctttcacagtttataaatcttctcaca-ttaatcatcaaattaaatcat 46642861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 15190360 - 15190428
Alignment:
Q  44 tttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaac 112  Q
    |||||||||||||| |||||||||| || ||||| ||||||| |||||||||| ||| |||||||||||    
T  15190360 tttaaacatatacagcaagtaaccatcattaataatcttcatgtataacaatttcaacttcatatcaac 15190428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 14185252 - 14185318
Alignment:
Q  114 tctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    ||||||||||||||||||||||||||||||||| ||||||  |||| || |||  ||||||||||||    
T  14185252 tctttcacaatatataaatattttcacatttaaccatcaacttaaaacaacaacgttaatcatctta 14185318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 15868808 - 15868765
Alignment:
Q  2 atcaaagtaaatcatatttatcacaacagcaagacaacatcatt 45  Q
    |||||||||||||||||| ||||||||| ||| |||||||||||    
T  15868808 atcaaagtaaatcatattcatcacaacaacaaaacaacatcatt 15868765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 15868861 - 15868794
Alignment:
Q  94 attacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 163  Q
    ||||||| ||||||||| | || |||||||||||||| |||| || |||| |||||||||||||||||||    
T  15868861 attacaacttcatatcatcatcattcacaatatataa-tattctctcatt-aatcatcaaagtaaatcat 15868794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 3e-56; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 2 - 172
Target Start/End: Complemental strand, 28194557 - 28194387
Alignment:
Q  2 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaat 101  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||| || |||     
T  28194557 atcaaagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacagcaagtaaccatcaataataatcttcatatataacatttgcaac 28194458  T
Q  102 ttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaa 172  Q
    | |||||||||  |||||||| |||||| || |||||||||||||||||||| |||||||| |||||||||    
T  28194457 tacatatcaacaactttcacattatatagattttttcacatttaatcatcaacgtaaatcaacaatattaa 28194387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 2 - 181
Target Start/End: Original strand, 43697386 - 43697566
Alignment:
Q  2 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaat 101  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||| |||||||| ||||||||||||||| || |||     
T  43697386 atcaaagtaaatcatatttatcacaacagcaagacagcatcatataaacatatacagcaagtaaccaacaataataatcttcatatataacatttgcaac 43697485  T
Q  102 ttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatcatcttaa 181  Q
    | |||||||||  |||||||| |||||| || ||||||||||||||||||||  ||||||| ||||||| |||||||||||    
T  43697486 tccatatcaacaactttcacactatatagatcttttcacatttaatcatcaacttaaatcaacaatattaaatcatcttaa 43697566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 82 - 191
Target Start/End: Original strand, 8885457 - 8885566
Alignment:
Q  82 tcatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatcttaa 181  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8885457 tcatatattacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatcttaa 8885556  T
Q  182 catctcctct 191  Q
    ||||| ||||    
T  8885557 catcttctct 8885566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 21 - 172
Target Start/End: Complemental strand, 51274441 - 51274290
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    ||||||||| ||| |||| | ||||||||||||| || ||||| |||| |||||||| || || |||||||||||||||| ||||||||||| |||||||    
T  51274441 atcacaacaacaaaacaaaaacatttaaacatatgcatcaagtcaccatcaataataatcatcttatataacaattacaacttcatatcaacatctttca 51274342  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaa 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51274341 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaa 51274290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 59 - 180
Target Start/End: Complemental strand, 12328670 - 12328549
Alignment:
Q  59 caagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaa 158  Q
    ||||| |||| |||||||| || ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12328670 caagtcaccatcaataataatcatcatatataacaattacatcttcatatcaacgtctttcacaatatataaatattttcaaatttaatcatcaaagtaa 12328571  T
Q  159 atcatcaatattaatcatctta 180  Q
    ||||||||||||||||||||||    
T  12328570 atcatcaatattaatcatctta 12328549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 49261342 - 49261452
Alignment:
Q  2 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaat 101  Q
    |||||||||||||||||| ||||| |||||||||||  |||||||||||||||| |||||||||||| |||||||| ||||||| ||||||||||||||     
T  49261342 atcaaagtaaatcatattcatcacgacagcaagacagtatcatttaaacatatataacaagtaaccatcaataataatcttcatgtataacaattacaac 49261441  T
Q  102 ttcatatcaac 112  Q
    |||||||||||    
T  49261442 ttcatatcaac 49261452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 20636851 - 20636961
Alignment:
Q  2 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaat 101  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||| | ||||| ||||||||||||||     
T  20636851 atcaaagaaaatcatattcatcacgacagcaagacaacatcatttaaacatatacagcaagtaaccatcaataataatattcatgtataacaattacaac 20636950  T
Q  102 ttcatatcaac 112  Q
    ||||| |||||    
T  20636951 ttcatgtcaac 20636961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 35981806 - 35981696
Alignment:
Q  2 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaat 101  Q
    |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || || || ||||||| |  ||||||| |||     
T  35981806 atcaaagtcaatcatattcatcacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattagtaatcttcatgtgcaacaatttcaac 35981707  T
Q  102 ttcatatcaac 112  Q
    |||||||||||    
T  35981706 ttcatatcaac 35981696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 51326904 - 51326974
Alignment:
Q  83 catatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaa 153  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  51326904 catatataacaattacaacttcatatcaacgtctttcataatatataaatatgttcacatttaatcatcaa 51326974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 28194611 - 28194543
Alignment:
Q  94 attacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 163  Q
    ||||||| ||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  28194611 attacaacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatcat 28194543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 43543069 - 43543137
Alignment:
Q  94 attacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 163  Q
    ||||||| ||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  43543069 attacaacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatcat 43543137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 43697332 - 43697400
Alignment:
Q  94 attacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 163  Q
    ||||||| ||||||||| | ||||||||||||||| |||| | ||||| |||||||||||||||||||||    
T  43697332 attacaacttcatatcagcatctttcacaatatatcaataatctcaca-ttaatcatcaaagtaaatcat 43697400  T

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Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 46382717 - 46382652
Alignment:
Q  94 attacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatca 162  Q
    ||||||| ||||||||||| ||||||||||  |||||||||| ||||| ||||||||||||||||||||    
T  46382717 attacaacttcatatcaacatctttcacaa--tataaatattctcaca-ttaatcatcaaagtaaatca 46382652  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 89 - 132
Target Start/End: Original strand, 48301078 - 48301121
Alignment:
Q  89 taacaattacaatttcatatcaacgtctttcacaatatataaat 132  Q
    |||| ||||||| ||||||||||| |||||||||||||||||||    
T  48301078 taaccattacaacttcatatcaacatctttcacaatatataaat 48301121  T

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Target: scaffold0599 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 22 - 180
Target Start/End: Original strand, 4615 - 4773
Alignment:
Q  22 tcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttcac 121  Q
    ||||||| ||||| ||||| |||| ||  |||| || ||||| | || |||||||| |  ||||||||||||||||||||||||||||||||||||||||    
T  4615 tcacaaccgcaaggcaacaccattaaataatatgcatcaagtcaacatcaataataataatcatatataacaattacaatttcatatcaacgtctttcac 4714  T
Q  122 aatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4715 aatatataaatattttcacatttaatcatcaaagtaaatcatcattattaatcatctta 4773  T

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Target: scaffold0599; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 22 - 180
Target Start/End: Original strand, 197 - 355
Alignment:
Q  22 tcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttcac 121  Q
    ||||||| ||||| ||||| |||| ||  |||| || ||||| | || |||||||| |  ||||||||||||||||||||||||||||||||||||||||    
T  197 tcacaaccgcaaggcaacaccattaaataatatgcatcaagtcaacatcaataataataatcatatataacaattacaatttcatatcaacgtctttcac 296  T
Q  122 aatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  297 aatatataaatattttcacatataatcatcaaagtaaatcatcattattaatcatctta 355  T

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Target: scaffold0815 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 483 - 611
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    |||||||||||||||||||||||||| ||||||| || ||||| |||| |||||||| || |||||||||||||||| ||||||||||||||||||||||    
T  483 atcacaacagcaagacaacatcattttaacatatgcagcaagtcaccatcaataataatcatcatatataacaattataatttcatatcaacgtctttca 582  T
Q  121 caatatataaatattttcacatttaatca 149  Q
    |||||||||||||||||| ||||||||||    
T  583 caatatataaatattttctcatttaatca 611  T

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Target: scaffold0009 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 85261 - 85371
Alignment:
Q  2 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaat 101  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||| ||||||||||||||| || |||     
T  85261 atcaaagtaaatcatattcatcacaacagcaagacaacttcatttaaacatatacatcaagtaaccatcaataataatcttcatatataacatttgcaac 85360  T
Q  102 ttcatatcaac 112  Q
    | |||||||||    
T  85361 tccatatcaac 85371  T

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Target: scaffold0009; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 85207 - 85275
Alignment:
Q  94 attacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 163  Q
    ||||||| ||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  85207 attacaacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatcat 85275  T

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Target: scaffold1137 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold1137
Description:

Target: scaffold1137; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 2410 - 2300
Alignment:
Q  2 atcaaagtaaatcatatttatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaat 101  Q
    |||||||| ||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| || ||||| ||||||| || ||||||| |||     
T  2410 atcaaagtcaatcatattcatcacgacagcaagacagcatcatttaaacatatacaacaagtaaccatcattaataatcttcatgtacaacaatttcaac 2311  T
Q  102 ttcatatcaac 112  Q
    |||||||||||    
T  2310 ttcatatcaac 2300  T

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Target: scaffold0434 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 6839 - 6769
Alignment:
Q  94 attacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatc 164  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6839 attacaactccatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatc 6769  T

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Target: scaffold0080 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 59458 - 59300
Alignment:
Q  21 atcacaacagcaagacaacatcatttaaacatatacaacaagtaaccaccaataatattcttcatatataacaattacaatttcatatcaacgtctttca 120  Q
    ||||| |||||||| ||||| |||| ||| |||| || ||||| | || ||| |||| || ||  ||||||||||||||| ||||||||||| |||||||    
T  59458 atcacgacagcaaggcaacaccattaaaaaatatgcagcaagtcaacatcaacaataatcatccaatataacaattacaacttcatatcaacatctttca 59359  T
Q  121 caatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    ||||||||||||  |||||||||||||||||||  ||||||  ||| |||||||||||||    
T  59358 caatatataaat-ctttcacatttaatcatcaacttaaatccacaacattaatcatctta 59300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 15515 - 15421
Alignment:
Q  86 atataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    ||||||||||  ||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||||||||||    
T  15515 atataacaatcgcaacttcatatcaacatttttcacaatatataaatattttcacatttaatcatcaacttaaatcaacaacattaatcatctta 15421  T

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Target: scaffold0061; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 24573 - 24479
Alignment:
Q  86 atataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    ||||||||||  ||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||||||||||    
T  24573 atataacaatcgcaacttcatatcaacatttttcacaatatataaatattttcacatttaatcatcaacttaaatcaacaacattaatcatctta 24479  T

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Target: scaffold0100 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 36218 - 36142
Alignment:
Q  86 atataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 163  Q
    ||||||| ||||||| ||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  36218 atataaccattacaacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatcat 36142  T

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Target: scaffold0004 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 362964 - 363032
Alignment:
Q  94 attacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 163  Q
    ||||||| ||||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||||||||    
T  362964 attacaacttcatatcaacatctttcaaaatatataaatattctcaca-ttaatcatcaaagtaaatcat 363032  T

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Target: scaffold0335 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 86 - 177
Target Start/End: Original strand, 869 - 959
Alignment:
Q  86 atataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatc 177  Q
    ||||||| ||||||| ||||||||||| ||||||||||||||| |||  |||||||||||||||||||  ||||||  ||| ||||||||||    
T  869 atataaccattacaacttcatatcaacatctttcacaatatattaat-ctttcacatttaatcatcaacttaaatccacaacattaatcatc 959  T

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Target: scaffold0001 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 86 - 176
Target Start/End: Original strand, 76954 - 77042
Alignment:
Q  86 atataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcat 176  Q
    ||||||| ||||||| |||||||| || |||||||||||||||||  |||||||||||||||||||||  ||||||  ||| |||||||||    
T  76954 atataaccattacaacttcatatccacatctttcacaatatataa--attttcacatttaatcatcaacttaaatccacaacattaatcat 77042  T

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Target: scaffold0371 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 180
Target Start/End: Original strand, 3128 - 3221
Alignment:
Q  86 atataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcatctta 180  Q
    ||||||| ||||||| ||||||||||| | |||||| ||||||||||  |||||||||||||||||||  ||||||  ||| |||||||||||||    
T  3128 atataaccattacaacttcatatcaacatttttcacgatatataaat-ctttcacatttaatcatcaacttaaatccacaacattaatcatctta 3221  T

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Target: scaffold0513 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0513
Description:

Target: scaffold0513; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 11031 - 10963
Alignment:
Q  94 attacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 163  Q
    ||||||| ||||||||||| ||||| |||||||||||||||| ||||| | |||||||||||||||||||    
T  11031 attacaacttcatatcaacatcttttacaatatataaatattctcaca-taaatcatcaaagtaaatcat 10963  T

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Target: scaffold0810 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0810
Description:

Target: scaffold0810; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 3004 - 3063
Alignment:
Q  94 attacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaa 154  Q
    ||||||| ||||||||||| |||||||||||||||||||||| ||||| ||||||||||||    
T  3004 attacaacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaa 3063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0810; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 3066 - 3124
Alignment:
Q  124 tatataaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatcatcttaa 181  Q
    |||||| || |||||||||||||||||||| |||||||| ||||||| |||||||||||    
T  3066 tatatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttaa 3124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 5536 - 5455
Alignment:
Q  94 attacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaatcat 176  Q
    ||||||| |||||||||||  ||||||||||||||||||  |||||||||||||||||||  ||||||  ||| |||||||||    
T  5536 attacaacttcatatcaacacctttcacaatatataaat-ctttcacatttaatcatcaacttaaatccacaacattaatcat 5455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 8446 - 8379
Alignment:
Q  94 attacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcat 163  Q
    ||||||| ||||||||| | || |||||||||||||| |||| || |||| |||||||||||||||||||    
T  8446 attacaacttcatatcatcatcattcacaatatataa-tattctctcatt-aatcatcaaagtaaatcat 8379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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