View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12520_low_6 (Length: 482)
Name: NF12520_low_6
Description: NF12520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12520_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 3425685 - 3425214
Alignment:
| Q |
1 |
acgaaccagaaaagaactcgagcagaaatagaaaggatggacagtgcaaacttttgcacagaaatagagcaaggatggagaacaatgatgacataaccag |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425685 |
acgaaccaaaaaagaactcgagcagaaatagaaaggatggacagtgcaaacttttgcacagaaatagagcaaggatggagaacaatgatgacataaccag |
3425586 |
T |
|
| Q |
101 |
gctctcataagtcataccatatttgtcttatagggcacaagagtgtgtatgatagctattgtagatacgctatacaagattctagctatgacagttaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425585 |
gctctcataagtcataccatatttgtcttataggacacaagagtgtgtatgatagctattgtagatacgctatacaagattctagctatgacagttaatt |
3425486 |
T |
|
| Q |
201 |
atggataactaacaagataacttgctacacaagttatctctgtgaatgacactaacttccttattttcatggtcaatacaaggcaacaatgacagaactc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425485 |
atggataactaacaagataacttgctacacaagttatctctgtgaatgacactaacttccttattttcatggtcaatacaaggcaacaatgacagaactc |
3425386 |
T |
|
| Q |
301 |
aaactcaaagatacggtaacaggatttttgagaatttttccctaaaattgcaatagcagacatcaaatcacaacggtaccgggatagcaccagcgccgca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3425385 |
aaactcaaagatacggtaacaggatttttgagaatttttccctaaaattgcaatagcagatatcaaatcacaacggtaccgggatagcaccagcgccgca |
3425286 |
T |
|
| Q |
401 |
atggcgctgctttttaaccactaatataggccgctagtgatgatactctcaatggcgcttttcgggcctatg |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3425285 |
atggcgctgctttttaaccactaatataggccgctagtgatgatactctcaatggcgcttttcgggcctatg |
3425214 |
T |
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