View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12520_low_7 (Length: 450)
Name: NF12520_low_7
Description: NF12520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12520_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 107 - 443
Target Start/End: Complemental strand, 10436518 - 10436180
Alignment:
| Q |
107 |
aaagcaaccagattgtcaacagtaaacaattgtttatatcaca--aatcttcaacggtaaaaccaaaatattagacttaaataaaattcaagaaaaagaa |
204 |
Q |
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| T |
10436518 |
aaagcaaccagattgtcaacagtaaacaattgtttatatcacacaaatcttcaacatataaacaaaaatattagacttaaataaaattcaagaaaaagaa |
10436419 |
T |
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| Q |
205 |
ccgatgattcattgccaagttcttgggtatccacaataaacaagaaccaagtaaaataataatactggaaatcgaaaagttatattccgcagcatgaaaa |
304 |
Q |
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| T |
10436418 |
ccgttgattcatcgccaagttcttgggtatccacaataaacaagaaccaagtaaaataataatactggaaatcgaaaagttctattgcgcagcatgaaaa |
10436319 |
T |
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| Q |
305 |
ttacccagaaagaaggttaggcacccgcagcttcatgcgattttgaatctgctgtgccagagcatccaccaaagctatccttccaagcttacttggaggg |
404 |
Q |
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| T |
10436318 |
ttacccagaaagaaggttaggcacccgcagcttcatgcgattttgaatctgctgtgccagagcatccaccaaagctatccttccaagcttacttggaggg |
10436219 |
T |
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| Q |
405 |
gctcctgtcagtatggacttgaggctttcactctctgct |
443 |
Q |
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| T |
10436218 |
gctcctgtcagtatggacttgaggctttcactctctgct |
10436180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 318 - 443
Target Start/End: Complemental strand, 7371523 - 7371398
Alignment:
| Q |
318 |
aggttaggcacccgcagcttcatgcgattttgaatctgctgtgccagagcatccaccaaagctatccttccaagcttacttggaggggctcctgtcagta |
417 |
Q |
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| T |
7371523 |
aggttaggcacccgcagcttcatgcgattttgaatctgttgtgccagagcatccaccaaagccatccttccaagcttacttggaggggctcctgtcagta |
7371424 |
T |
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| Q |
418 |
tggacttgaggctttcactctctgct |
443 |
Q |
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| T |
7371423 |
tggacttgaggctttcactctctgct |
7371398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 10436623 - 10436557
Alignment:
| Q |
2 |
atgagatggacatcagatgatcaaatgagtgatgtataaagaagtgcacattaactaagaggctgct |
68 |
Q |
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| T |
10436623 |
atgaaatgcacaccagatgatcaaatgagcgatgtataaaaaagtgcacattaaccaagaggctgct |
10436557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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