View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12520_low_9 (Length: 348)
Name: NF12520_low_9
Description: NF12520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12520_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 3984055 - 3984252
Alignment:
| Q |
20 |
aatatcaactcatgtattcatccccttccccttccccgtccttgtaatttgttaccataacat------------tattattatttgttttgattgtctt |
107 |
Q |
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| T |
3984055 |
aatatcaactcatgtattcatccccttccccttccccgtccttgtaatttgttaccataacataatatattacattattattatttgttttgattctctt |
3984154 |
T |
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| Q |
108 |
cttattcatcttctcctttatactgtcattatttttaaaactatgaaatcaaatccattaaaaaagtattcaaatataaacaattataccttaatttt |
205 |
Q |
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| T |
3984155 |
cttattcatcttctcctttatactgtcattatttttaaaactaagaaatcaaatccgttaaaaaagtattcaaatataaacaatgataccttaatttt |
3984252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 283 - 343
Target Start/End: Original strand, 3984279 - 3984339
Alignment:
| Q |
283 |
atacaatcatcatcatcacacaaagaatactcagtgagctgagtatcacacctatgcttct |
343 |
Q |
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| T |
3984279 |
atacaatcattatcatcacacaaagaatactcagtgagctgagtatcacaccaatacttct |
3984339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 741499 - 741311
Alignment:
| Q |
20 |
aatatcaactcatgtattcatccccttccccttccccgtccttgtaatttgttaccataa-------cattattattatttgttttgattgtcttcttat |
112 |
Q |
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| T |
741499 |
aatatcaactcatgccctcatccccatcctcttccccttccttgtcatttgttatcataataaatcacattatt-ttaattattttgatcctctttttat |
741401 |
T |
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| Q |
113 |
tcatcttctcctttatactgtcattatttttaaaactatgaaatcaaatccattaaaaaagtattcaaatataaacaattataccttaat |
202 |
Q |
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| T |
741400 |
ccatcttgtcctttatattgtcacaatttttaaaattaagaaatcaaatccgttaaaagtgtattcaattgtaaacaatcttaccttaat |
741311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 797388 - 797579
Alignment:
| Q |
20 |
aatatcaactcatgtattcatccccttccccttccccgtccttgtaatttgttaccataa-------cattattattatttgttttgattgtcttcttat |
112 |
Q |
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||||||||||||||| |||||||| || ||||||| ||||||| |||| ||||||||| ||||||| ||||| ||||||| |||| |||| |
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| T |
797388 |
aatatcaactcatgtcgtcatccccaacctcttccccttccttgtcatttattaccataataaatcacattatttttatta-ttttgatcctctttttat |
797486 |
T |
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| Q |
113 |
tcatcttctcctttatactgtcattatttttaaaactatgaaatcaaatccattaaaaaagtattcaaatataaacaattataccttaatttt |
205 |
Q |
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| T |
797487 |
ccatcttcttctttatattgtcacaattttttaaattaggaaatcaaatacgttaaaaatgtattcaatgataaacaatcaaaccttaatttt |
797579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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