View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12521_high_16 (Length: 311)

Name: NF12521_high_16
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12521_high_16
NF12521_high_16
[»] chr6 (1 HSPs)
chr6 (1-296)||(1787062-1787361)


Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 1787062 - 1787361
Alignment:
Q  1 ttataactttttcaaatatgtatttgtgattaaatggtgtatgtatcaaaatgtttgtgaccacataagacttgtatatgtgactaaatggtgtatctaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1787062 ttataactttttcaaatatgtatttgtgattaaatggtgtatgtatcaaaatgtttgtgaccacataagacttgtatatgtgactaaatgatgtatctaa 1787161  T
Q  101 atgtttgtgaccacacaagactagggttcctgcaattagga-gaacccacattcacatagtctgatatcggaaatcgtctaatcttaattgaatggtcat 199  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||| ||||| |||||||||||||    
T  1787162 atgtttgtgaccatacaagactagggttcctgcaattaggaggaacccacattcacgtagtctgatattgggaatcgtctgatcttgattgaatggtcat 1787261  T
Q  200 cttgatcg---aatcaagattatcctgaatgcgtgactgcgtacttttgttgagcgtagtaaatctagtttgtatagatacaaagaaaatagactgatgt 296  Q
    ||||||||   |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||    
T  1787262 cttgatcgaacaatcaagattatcctgaatgcgtgactgcgtacttttgttgaccgtaataaatctagtttgtatagatacaaagaaaatagagtgatgt 1787361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University