View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12521_high_18 (Length: 296)
Name: NF12521_high_18
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12521_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 1136677 - 1136959
Alignment:
| Q |
1 |
cttgataatgtgacttgtatcctccttttttaaggataaattaatctagcaccgtgcatgactttaagagacatatcacgttgttgaaagtgtctaccat |
100 |
Q |
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| T |
1136677 |
cttgataatgtgacttgtatcctccttttttaaggataaattaatctcgcaccgtgcatgactttaagagacatatcacgttgttgaaagtgtctaccat |
1136776 |
T |
|
| Q |
101 |
ataatttttatgcgtaggactttgaactatgcaaagcaaaaaggatgattgcaaaaatgtgagtttgaaagccttgattcatgaaatgaaagacat---g |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
1136777 |
ataatttttatgcgtaggactttgaactatgcaaagcaaaaaggatgattacaaaaatgtgagtttgaaagccttgattcatgaaatgaaaaacatgtag |
1136876 |
T |
|
| Q |
198 |
taaccttgaaattaagcct--gtgatttagatggtcgttatgatggatttctatcacatttccaaacacaagcattgtaataa |
278 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1136877 |
taaccttgaaattaaacctaagtgatttagatggtcgttatgatggatttctatcacatttccaaacacaagcattgtaataa |
1136959 |
T |
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