View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12521_high_23 (Length: 250)
Name: NF12521_high_23
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12521_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 30700885 - 30700641
Alignment:
| Q |
1 |
caattgtttcactagttctctcaatccaccctaatgcattcaatgacgttctggcgatcatcgacccaactattgaaggttgt-------aatgacttgg |
93 |
Q |
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| T |
30700885 |
caattgtttcactagttctctcaatccaccctaatacattcaatgaccttctggcgatcaccgacccaactattgaaggttgttgtttgtaatgacttgg |
30700786 |
T |
|
| Q |
94 |
ctttactccaccatgactctccttttcgtaaatgtataaatacatactttcatattgtaatgcaaggtatatcttttttccacctaaaaatttatcactc |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||| ||||||||| |
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| T |
30700785 |
ctttactccaccatgactctccttttcgtaaatgtataaatgcatactttcataatgta----------tatcttttttccacctaaaaacttatcactc |
30700696 |
T |
|
| Q |
194 |
ttcaccctcttctctttctcaatacacgtcacagttacattttcatctcactcga |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30700695 |
ttcaccctcttctctttctcaatacacgtcacagttacattttcaaatcactcga |
30700641 |
T |
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