View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12521_high_26 (Length: 231)
Name: NF12521_high_26
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12521_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 40058847 - 40058607
Alignment:
| Q |
1 |
caaaattgtaaaagaaataaatcaaaaatgattaatacataagctatcgaatt----------------cctaaatatttgaatatgcgttttgagattc |
84 |
Q |
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| T |
40058847 |
caaaattgtaaaagaaataaatcaaaaataattaatacataagctatcgaattattcattcatcgaattcctaaatatttgaatatgcattttgagattc |
40058748 |
T |
|
| Q |
85 |
tacggtatttagcataaactaggtaggaattgtgaata-aattaaatgtaagtaaaagagaaaagaaatttaattaagcaagtggaacgtgtgaacaagt |
183 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40058747 |
tacggtatttagcagaaactaggtaggaattgtgaatataattaaatgtaagtaaaagagaaaagaaatttaattaagcaagtggaacgtgtgaacaagt |
40058648 |
T |
|
| Q |
184 |
tgagagaaatctaaaggtagagaatgaggtcagtgaacgag |
224 |
Q |
| |
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|||||||||||||||||||||||||||||| || ||||||| |
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| T |
40058647 |
tgagagaaatctaaaggtagagaatgaggttagagaacgag |
40058607 |
T |
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