View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12521_high_27 (Length: 228)
Name: NF12521_high_27
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12521_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 213
Target Start/End: Original strand, 13945106 - 13945313
Alignment:
| Q |
6 |
gtggagaagcaaaggggaccacacgaagattcgttgaaccaagaaggaaactctctttaaacctaaatttgagggaggtttaagtttcaaaaacttaagg |
105 |
Q |
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|||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13945106 |
gtggggaagcaaaggggatcacaggaagattcattgaaccaagaaggaaactctctttaaacctaaatttgagggaggtttaggtttcaaaaacttaagg |
13945205 |
T |
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| Q |
106 |
atgttcaacgaagcaatgctagcaaaataagtttggagactccatgttaatacataatctcttattagtcaagtatataaggcgaactaatatccaacaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13945206 |
atgttcaacgaagcaatgctagcaaaataagtttggagactccatgttaatacataatctcttattagtcaagtatataaggcgaactaatatccaacaa |
13945305 |
T |
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| Q |
206 |
ctgatgtc |
213 |
Q |
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|||||||| |
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| T |
13945306 |
ctgatgtc |
13945313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 213
Target Start/End: Original strand, 14086295 - 14086502
Alignment:
| Q |
6 |
gtggagaagcaaaggggaccacacgaagattcgttgaaccaagaaggaaactctctttaaacctaaatttgagggaggtttaagtttcaaaaacttaagg |
105 |
Q |
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|||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14086295 |
gtggggaagcaaaggggatcacaggaagattcattgaaccaagaaggaaactctctttaaacctaaatttgagggaggtttaggtttcaaaaacttaagg |
14086394 |
T |
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| Q |
106 |
atgttcaacgaagcaatgctagcaaaataagtttggagactccatgttaatacataatctcttattagtcaagtatataaggcgaactaatatccaacaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14086395 |
atgttcaacgaagcaatgctagcaaaataagtttggagactccatgttaatacataatctcttattagtcaagtatataaggcgaactaatatccaacaa |
14086494 |
T |
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| Q |
206 |
ctgatgtc |
213 |
Q |
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|||||||| |
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| T |
14086495 |
ctgatgtc |
14086502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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