View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12521_high_29 (Length: 202)

Name: NF12521_high_29
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12521_high_29
NF12521_high_29
[»] chr1 (2 HSPs)
chr1 (93-184)||(34302081-34302172)
chr1 (1-61)||(34302167-34302227)
[»] chr4 (1 HSPs)
chr4 (127-184)||(9109459-9109516)


Alignment Details
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 93 - 184
Target Start/End: Complemental strand, 34302172 - 34302081
Alignment:
Q  93 ttgataatgtaaggatgtatttgaaattgagtaaataaggtcaatccgagatagatttgataacagattacaactgagggacaaatcacaat 184  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34302172 ttgataatgtaaggatgtatttgaaattgagtcaataaggtcaatccgagatagatttgataacagattacaactgagggacaaatcacaat 34302081  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 34302227 - 34302167
Alignment:
Q  1 atctggtccatctgatatttgaaattgcaagacggtaatcaaattcgttgagccattgata 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34302227 atctggtccatctgatatttgaaattgcaagacggtaatcaaatttgttgagccattgata 34302167  T

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Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 9109459 - 9109516
Alignment:
Q  127 ataaggtcaatccgagatagatttgataacagattacaactgagggacaaatcacaat 184  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  9109459 ataaggtcaatctaagatagatttgataacagattacaactgagggacaaatcacaat 9109516  T

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