View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12521_high_3 (Length: 456)
Name: NF12521_high_3
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12521_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 11 - 441
Target Start/End: Original strand, 43337128 - 43337559
Alignment:
| Q |
11 |
ttcactgttgatacaaacatgctgccaaacacatacattnnnnnnnttaaaatagcatataatataaatatttcctaccaataatagttt-ctaacaata |
109 |
Q |
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| T |
43337128 |
ttcactgttgatacaaacatgctgccaaacacatacattaaaaaaattaaaatagcatataatataaatatttcctaccaataatagttttctaacaata |
43337227 |
T |
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| Q |
110 |
attaaatcacactagttagcatgaggttatttattacactacagtttaattgtattattgctaagaggggacaatagaacaaatgttttcttgtgacaaa |
209 |
Q |
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| T |
43337228 |
attaaatcacactagttagcatgaggttatttattacactacagtttaattgtattattgctaagaggggacagtagaacaaatgttttcttgtgacaaa |
43337327 |
T |
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| Q |
210 |
cagacatgtcatggcatgtagtgctacagatttattcgtaacacttgtcataaataatgtggttacctataattaaataatattaaattgtactaattgt |
309 |
Q |
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| T |
43337328 |
cagacatgtcatggcatgtagtgctacagatttattcgtaacacttgtcataaataatgtggttacctataattaaataatattaaatagtactaattgt |
43337427 |
T |
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| Q |
310 |
gaagcacaaggaatctaacaaattgttattgcagtctttcagaacaaaatgccacattgagtgatggaattggaatatattgttataaactatataatat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
43337428 |
gaagcacaaggaatctaacaaattgttattgcagtctttcagaacaaaatgccacattgagtgatggaattgtaatatattgctataaactatataatat |
43337527 |
T |
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| Q |
410 |
aatactatcatgttgattaaattgattaaact |
441 |
Q |
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| T |
43337528 |
aatactatcatgttgattaaattgattaaact |
43337559 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 41
Target Start/End: Original strand, 4570123 - 4570153
Alignment:
| Q |
11 |
ttcactgttgatacaaacatgctgccaaaca |
41 |
Q |
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| T |
4570123 |
ttcactgttgatacaaacatgctgccaaaca |
4570153 |
T |
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