View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12521_low_1 (Length: 774)
Name: NF12521_low_1
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12521_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 721; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 721; E-Value: 0
Query Start/End: Original strand, 19 - 764
Target Start/End: Original strand, 21878311 - 21879056
Alignment:
| Q |
19 |
ggtaatagtttgaaaaattgaaatgattgtatgttcatgtgtcagatatttgttcacgctttcaatacatattgtcgagtgttggtgctacgtagcttta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21878311 |
ggtaatagtttgaaaaattgaaatgattgtatgttcatgtgtcagatatttggtcacgctttcaatacatattgtcgagtgttggtgctacgtagcttta |
21878410 |
T |
|
| Q |
119 |
tacaattctgttaaatagaattctaactgtttttgtgtaaaaggttatagtgttgagtgcttctgcaaatagattgggaaatcttaaacaacatgctgat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21878411 |
tacaattctgttaaatagaattctaactgtttttgtgtaaaaggttatagtgttgagtgcttctgcaaatagattgggaaatcttaaacaacatgctgat |
21878510 |
T |
|
| Q |
219 |
aattatgcttctttgatcatggaagagcttgatccagatcataatggatatatagaggtaattagaattagaagccgattaaattgtaacgacatatatc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21878511 |
aattatgcttctttgatcatggaagagcttgatccagatcataatggatatatagaggtaattagaattagaagccgattaaattgtaacgacatatatc |
21878610 |
T |
|
| Q |
319 |
ttctgttcagaatgttttttaaatttacatctcttgaaaacagatgtggcagcttgaaactctattaagggaaatggttagtgcagaagatggcaaacca |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21878611 |
ttctgttcagaatgttttttaaatttacatctcttgaaaacagatgtggcagcttgaaactctattaagggaaatggttagtgcagaagatggcaaacca |
21878710 |
T |
|
| Q |
419 |
aaacttggtacaagaacacaaactttaactagagctatgataccatgcaagtatcgaactcctattagaaaatggatcacgaaaaccgcagaatttgtaa |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21878711 |
aaacttggtacaagaacacaaactttaactagagctatgataccatgcaagtatcgaactcctattagaaaatggatcacgaaaaccgcagaatttgtaa |
21878810 |
T |
|
| Q |
519 |
atgaacagtggnnnnnnntatggattatcgttctttggttagccataaacttggtacttttcgtttggaagtttctccaatacaaggaaagaccagcata |
618 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21878811 |
atgaacagtggaaaaaaatatggattatcgttctttggttagccataaacttggtacttttcgtttggaagtttctccaatacaaggaaagaccagcata |
21878910 |
T |
|
| Q |
619 |
tgaagtaatgggatcatgtctatgttttgcaaagggttctgctgagactctcaaattcaacatggctctaattgtccttacaatgtgtagaagaacactt |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21878911 |
tgaagtaatgggatcatgtctatgttttgcaaagggttctgctgagactctcaaattcaacatggctctaattgtccttacaatgtgtagaagaacactt |
21879010 |
T |
|
| Q |
719 |
acaaagttacgaggaacatttcttagtcaaatcattccttttgatg |
764 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21879011 |
acaaagttacgaggaacatttcttagtcaaatcattccttttgatg |
21879056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 647 - 684
Target Start/End: Complemental strand, 46562263 - 46562226
Alignment:
| Q |
647 |
gcaaagggttctgctgagactctcaaattcaacatggc |
684 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
46562263 |
gcaaagggtgctgctgagactctcaagttcaacatggc |
46562226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University