View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12521_low_10 (Length: 434)
Name: NF12521_low_10
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12521_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 43009081 - 43009476
Alignment:
| Q |
18 |
taaacaatatatagtttcatgtcattattattattatttcttagtaagtgtacccttaataattcagtattaattgtaattcatttgtgcaacatcttct |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43009081 |
taaacaatatatagtttcatgtcattattattattatttcttagtaagtgtacccttaataattcagtattaattgtaattcatttgtgcaacatct--- |
43009177 |
T |
|
| Q |
118 |
ctatttcaggtattgtataannnnnnnccaccacagcaaatatatagtttgtgatattatttttataagcaaatatttattgaaaagagagcaaagggta |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43009178 |
ctatttcaggtattgtataatttttttccaccacagcaaatatatagtttgtgatattatttttataagcaaatatttattgaaaagagagcaaagggta |
43009277 |
T |
|
| Q |
218 |
ctcaaatttgattacaagaggaaaatcaagcatactctaaacatgaaatatgattgttccaccagtctaaaaacaagttactcttctccttccctctctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43009278 |
ctcaaatttgattacaagaggaaaatcaagcatactctaaacatgaaatatgattgttccaccagtctaaaaacaagttactcttctccttccctctctt |
43009377 |
T |
|
| Q |
318 |
actaataagccaaagttaagaaatcttcttgattatgtcagcaagcaaagtatacctccttttgtttttgagtcttgttggtttattttagtctctaca |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43009378 |
actaataagccaaagttaagaaatcttcttgattatgtcagcaagcaaattatacctccttttgtttttgagtcttgttggtttattttagtctctaca |
43009476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University