View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12521_low_11 (Length: 426)

Name: NF12521_low_11
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12521_low_11
NF12521_low_11
[»] chr1 (3 HSPs)
chr1 (7-189)||(45797529-45797711)
chr1 (261-426)||(45797293-45797457)
chr1 (84-188)||(42791329-42791433)
[»] chr8 (4 HSPs)
chr8 (7-109)||(18838820-18838922)
chr8 (84-189)||(18839009-18839114)
chr8 (23-76)||(18838923-18838976)
chr8 (132-189)||(31588328-31588384)
[»] chr6 (2 HSPs)
chr6 (44-183)||(864332-864472)
chr6 (59-109)||(32879710-32879760)
[»] scaffold0318 (1 HSPs)
scaffold0318 (44-120)||(2106-2182)
[»] chr4 (1 HSPs)
chr4 (85-185)||(4965378-4965479)
[»] chr7 (2 HSPs)
chr7 (44-78)||(48582194-48582228)
chr7 (58-94)||(432476-432512)
[»] chr2 (5 HSPs)
chr2 (7-73)||(26425048-26425114)
chr2 (111-183)||(34997059-34997131)
chr2 (97-178)||(26425119-26425199)
chr2 (61-97)||(3816308-3816344)
chr2 (59-107)||(33710912-33710960)
[»] chr3 (1 HSPs)
chr3 (44-120)||(8359877-8359953)


Alignment Details
Target: chr1 (Bit Score: 163; Significance: 6e-87; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 7 - 189
Target Start/End: Complemental strand, 45797711 - 45797529
Alignment:
Q  7 ataaatcttgcataaattaactcacgtagattataaacagtgtgaattttcagcgtgacttaagtcacgctgcgtgtgttaagtcacgttgagtttaaca 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45797711 ataaatcttgcataaattaactcacgtagattataaacagtgtgaattttcagcgtgacttaagtcacgctgcgtgtgttaagtcacgttgagtttaaca 45797612  T
Q  107 catatgtgacttaattcatgcacatgtattttagaaagtttggttgagagtggacaaattttattgggagaatagcagaattc 189  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||    
T  45797611 catacgtgacttaactcatgcacatgtattttagaaagtttggttgagagtgaacaaattttattgggagaagagcataattc 45797529  T

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Target: chr1; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 261 - 426
Target Start/End: Complemental strand, 45797457 - 45797293
Alignment:
Q  261 ggacttattaacaaatattctttagtcatttgttaggatttaccttgacaattttatctccattattctaataatatgtagatctagaagtttcctttgt 360  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45797457 ggacttattaataaatattctttagtcatttgttaggatttaccttaacaattttat-tccattattctaataatatgtagatctagaagtttcctttgt 45797359  T
Q  361 tcatttcattatagagtataacgttgtatgctacatgaagacgcaattgttcatgttgactctaaa 426  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45797358 tcatttcattatagagtataatgttgtatgctacatgaagacgcaattgttcatgttgactctaaa 45797293  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 188
Target Start/End: Complemental strand, 42791433 - 42791329
Alignment:
Q  84 gttaagtcacgttgagtttaacacatatgtgacttaattcatgcacatgtattttagaaagtttggttgagagtggacaaattttattgggagaatagca 183  Q
    ||||||||||||||||||||||||||  ||||||||| ||| |||    |||||| ||||||||||||| ||||| |||||| || |||| |||||||||    
T  42791433 gttaagtcacgttgagtttaacacatgcgtgacttaactcacgcaaggatatttttgaaagtttggttgggagtgaacaaatcttgttggaagaatagca 42791334  T
Q  184 gaatt 188  Q
     ||||    
T  42791333 taatt 42791329  T

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Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 18838820 - 18838922
Alignment:
Q  7 ataaatcttgcataaattaactcacgtagattataaacagtgtgaattttcagcgtgacttaagtcacgctgcgtgtgttaagtcacgttgagtttaaca 106  Q
    ||||| ||||||| | ||||||||  ||| ||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||| |||||||||||    
T  18838820 ataaaccttgcatgagttaactcatttaggttataaacagtgtgaattttcagcgtgacttaattcacgctgtgtgagttaagtcacgctgagtttaaca 18838919  T
Q  107 cat 109  Q
    |||    
T  18838920 cat 18838922  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 189
Target Start/End: Original strand, 18839009 - 18839114
Alignment:
Q  84 gttaagtcacgttgagtttaacacatatgtgacttaattcatgcacatgtattttagaaagtttggttgagagtggacaaattttattgggagaatagca 183  Q
    ||||||||||| ||||||||||||||  ||||||||| |||||||   ||||||| | |||||||| || |||||  |||||||||||  ||||| ||||    
T  18839009 gttaagtcacgctgagtttaacacatgcgtgacttaactcatgcaggggtattttcggaagtttggatgggagtgagcaaattttattatgagaagagca 18839108  T
Q  184 gaattc 189  Q
    ||||||    
T  18839109 gaattc 18839114  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 18838976 - 18838923
Alignment:
Q  23 ttaactcacgtagattataaacagtgtgaattttcagcgtgacttaagtcacgc 76  Q
    |||||||| |||| ||||||||| ||||||||||||| |||| |||||| ||||    
T  18838976 ttaactcatgtaggttataaacattgtgaattttcagtgtgagttaagttacgc 18838923  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 31588384 - 31588328
Alignment:
Q  132 gtattttagaaagtttggttgagagtggacaaattttattgggagaatagcagaattc 189  Q
    ||||||||||||||||||||| ||||| || |||||| ||||||||| |||| |||||    
T  31588384 gtattttagaaagtttggttgggagtgaac-aattttcttgggagaagagcataattc 31588328  T

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Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 44 - 183
Target Start/End: Complemental strand, 864472 - 864332
Alignment:
Q  44 cagtgtgaattttcagcgtgacttaagtcacgctgcgtgtgttaagtcacgttgagtttaacacatatgtgacttaattca-tgcacatgtattttagaa 142  Q
    |||||||||||||||  |||||||||||||||||||||| ||||||||||  ||||||||||| ||||||||||||| |||   || | ||||||| |||    
T  864472 cagtgtgaattttcaatgtgacttaagtcacgctgcgtgagttaagtcacactgagtttaacatatatgtgacttaactcacaccaaaagtatttttgaa 864373  T
Q  143 agtttggttgagagtggacaaattttattgggagaatagca 183  Q
    |||||| ||| ||||| |||||| || ||||||||| ||||    
T  864372 agtttgattgggagtgaacaaatcttgttgggagaagagca 864332  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 32879710 - 32879760
Alignment:
Q  59 gcgtgacttaagtcacgctgcgtgtgttaagtcacgttgagtttaacacat 109  Q
    |||||||||||||||||||||||| ||||| ||||| |||  |||||||||    
T  32879710 gcgtgacttaagtcacgctgcgtgagttaactcacgctgaaattaacacat 32879760  T

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Target: scaffold0318 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 2106 - 2182
Alignment:
Q  44 cagtgtgaattttcagcgtgacttaagtcacgctgcgtgtgttaagtcacgttgagtttaacacatatgtgacttaa 120  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||| |||| |||||||||||||||  |||||||||    
T  2106 cagtgtgaattttcagcgtgacttaagccacgctgcgtgagttaaatcacattgagtttaacacatgcgtgacttaa 2182  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 4965378 - 4965479
Alignment:
Q  85 ttaagtcacgttgagtttaacacatatgtgacttaattcatg-cacatgtattttagaaagtttggttgagagtggacaaattttattgggagaatagca 183  Q
    |||| ||||||||||||||||||||  ||||||||| | | | |||  ||||||| ||||||||| |||| ||||  |||||||||||||||||||||||    
T  4965378 ttaaatcacgttgagtttaacacatgcgtgacttaacttacgtcacgggtatttttgaaagtttgattgaaagtgagcaaattttattgggagaatagca 4965477  T
Q  184 ga 185  Q
    ||    
T  4965478 ga 4965479  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 78
Target Start/End: Complemental strand, 48582228 - 48582194
Alignment:
Q  44 cagtgtgaattttcagcgtgacttaagtcacgctg 78  Q
    |||||||||||||||||||||||||||||||||||    
T  48582228 cagtgtgaattttcagcgtgacttaagtcacgctg 48582194  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 432512 - 432476
Alignment:
Q  58 agcgtgacttaagtcacgctgcgtgtgttaagtcacg 94  Q
    |||||||||||| |||||||||||| |||||||||||    
T  432512 agcgtgacttaactcacgctgcgtgagttaagtcacg 432476  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 26425048 - 26425114
Alignment:
Q  7 ataaatcttgcataaattaactcacgtagattataaacagtgtgaattttcagcgtgacttaagtca 73  Q
    ||||||| ||||| | ||||||||||||| |||| |||| |||||||||||||| ||| ||||||||    
T  26425048 ataaatcatgcatgagttaactcacgtaggttatgaacattgtgaattttcagcatgatttaagtca 26425114  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 34997059 - 34997131
Alignment:
Q  111 tgtgacttaattcatgcacatgtattttagaaagtttggttgagagtggacaaattttattgggagaatagca 183  Q
    |||||||||| ||||||  | ||||||| | ||||||||||| ||||| |||||||||| |||||||| ||||    
T  34997059 tgtgacttaagtcatgcggaggtatttttggaagtttggttgggagtgaacaaattttaatgggagaagagca 34997131  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 178
Target Start/End: Original strand, 26425119 - 26425199
Alignment:
Q  97 gagtttaacacatatgtgacttaattcatgcacatgtattttagaaagtttggttgagagtggacaaattttattgggagaa 178  Q
    |||||||||||||  ||||||||| ||||||| |  |||||| ||||||||||||| || || |||||| ||||||| ||||    
T  26425119 gagtttaacacatgcgtgacttaactcatgca-agatattttcgaaagtttggttgggaatgaacaaatcttattggaagaa 26425199  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 3816344 - 3816308
Alignment:
Q  61 gtgacttaagtcacgctgcgtgtgttaagtcacgttg 97  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  3816344 gtgacttaagtcacgctgcgtgagttaactcacgttg 3816308  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 33710912 - 33710960
Alignment:
Q  59 gcgtgacttaagtcacgctgcgtgtgttaagtcacgttgagtttaacac 107  Q
    |||||||||||||||||||||||| ||||| ||||| |||  |||||||    
T  33710912 gcgtgacttaagtcacgctgcgtgagttaactcacgctgaaattaacac 33710960  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 8359877 - 8359953
Alignment:
Q  44 cagtgtgaattttcagcgtgacttaagtcacgctgcgtgtgttaagtcacgttgagtttaacacatatgtgacttaa 120  Q
    |||||||||||||||| || | ||||||| ||||| |||  |||||| || ||||||||||||| | ||||| ||||    
T  8359877 cagtgtgaattttcagtgtaatttaagtcgcgctgtgtgaattaagttacattgagtttaacacttgtgtgagttaa 8359953  T

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