View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12521_low_16 (Length: 378)
Name: NF12521_low_16
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12521_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 33507843 - 33507498
Alignment:
| Q |
19 |
ggttttccccgaaatgaaacttcattcattagaacacaagaaggtaaagaatgtccggaaatgtgggagttagttttagtttcaagtgtacgacaaatgc |
118 |
Q |
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| T |
33507843 |
ggttttcccctaaatggaacttcattcattagaacacaag---gtaaggaatgtccggaaatgtgggagttagttttagtttcaagtgta-gacaaatgc |
33507748 |
T |
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| Q |
119 |
ttctaactttactatgtatgcaatatt--tgttttttactatgttgggttgtgtgcattgacattgacacaaacatctacacagcactcagtgtgagtgt |
216 |
Q |
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| T |
33507747 |
ttctaactttactatgtatgcaatattgttgttttttactatgttgggttgtgtgcattgacattgacacaaacacctacacaacactcggtgtgagtgt |
33507648 |
T |
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| Q |
217 |
tgtgttaaatgtctctgtcaatgcttcacaacccaacataggtatattctgatcttggacattaaacaggccttcaatccgaaggtgctatatataatgc |
316 |
Q |
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||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33507647 |
tgtgttaaatgtcggtgtcaatgtttcacaacccaacataggtatattctgaccttggacactaaacaggccttcaatccgaaggtgctatatataatgc |
33507548 |
T |
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| Q |
317 |
aactttagtgtttggaattgaatttgaaggtttagtttttatttcagtga |
366 |
Q |
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| T |
33507547 |
aactttagtgtttggaattgaatttgaaggtttagtttttatttgagtga |
33507498 |
T |
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