View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12521_low_17 (Length: 378)
Name: NF12521_low_17
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12521_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 361
Target Start/End: Original strand, 48900581 - 48900926
Alignment:
| Q |
19 |
agattctcactcgattcttcttcgttatctttcaattcatttgtc---ggcgatgacggtattttctcccggtgtttcagaatccggcgcttcttcatcg |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48900581 |
agattctcactcgattcttcttcgttatctttcaattcatttgtcatcggagatgacggtattttctcccggtgtttcagaatccggcgcttcttcatcg |
48900680 |
T |
|
| Q |
116 |
gcctcatagccgccagcaaccaagcaacgagccgccgaggtgaatagcatttggcagaacgagaagaacggtgcggtggcgtttgattaacaacgttcat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48900681 |
gcctcatagccgccagcaaccaagcaacgagccgccgaggtgaatagcatttggcagaacgagaagaacggtgcggtggcgtttgattaacaacgttcat |
48900780 |
T |
|
| Q |
216 |
tgaagagtcaacggagtcggcggcagcggcgtcttcgtcggcgagaagaatatcggcgacacgtaaacgacggttgtgggtggagtgggaatcggggaag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48900781 |
tgaagagtcaacggagtcggcggcagcggcgtcttcgtcggcgagaagaatatcggcgacacgtaaacgacggttgtgggtggagtgggaatcggggaag |
48900880 |
T |
|
| Q |
316 |
ggagagagagtgatgggatttggggatttaaagaagaggcgcttca |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48900881 |
ggagagagagtgatgggatttggggatttaaagaagaggcgcttca |
48900926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 361
Target Start/End: Complemental strand, 11232015 - 11231681
Alignment:
| Q |
19 |
agattctcactcgattcttcttcgttatctttcaattcatttgtc---ggcgatgacggtattttctcccggtgtttcagaatccggcgcttcttcatcg |
115 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11232015 |
agattctcacacgattcttcttcgttatctttcaattcatttgtcatcggcgatgacggtattttctcccggtgtttcagaatccggcgcttcttcatcg |
11231916 |
T |
|
| Q |
116 |
gcctcatagccgccagcaaccaagcaacgagccgccgaggtgaatagcatttggcagaacgagaagaacggtgcggtggcgtttgattaacaacgttcat |
215 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11231915 |
gcctcatagccgccagcaaccaagcaacaagccgccgaggtgaatagcatttggcagaacgagaagaacggtgcg--ggcgtttgattaacaacgttcat |
11231818 |
T |
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| Q |
216 |
tgaagagtcaacggagtcggcggcagcggcgtcttcgtcggcgagaagaatatcggcgacacgtaaacgacggttgtgggtggagtgggaatcggggaag |
315 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| |||| |
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| T |
11231817 |
tgaa---------gagtcgacggcagcggcgtcttcgtcggcgagaagaatatcggcgatacgtaaacgacggttgagggtgaagtgggaatcggcgaag |
11231727 |
T |
|
| Q |
316 |
ggagagagagtgatgggatttggggatttaaagaagaggcgcttca |
361 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11231726 |
ggagagagagtgatgggatttggggatttaaagaagaagcgcttca |
11231681 |
T |
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