View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12521_low_18 (Length: 374)
Name: NF12521_low_18
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12521_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 74 - 360
Target Start/End: Original strand, 30701023 - 30701308
Alignment:
| Q |
74 |
cataatccaagatttgtaacaaaaacaccataatccgagagaggacaaaagcgaagtgcggaaagtagcggaacagtatccagagttagtttcttttttc |
173 |
Q |
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| T |
30701023 |
cataatccaagatttgtaacaaaaacaccataatccgagagaggacaaaagcgaagtgcggaa-gtagcggaactgtatccagagttagtttcttttttc |
30701121 |
T |
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| Q |
174 |
ttgaaagttcttgttacgatttagttggtatttgtatcttatttttcgggttaacattatctcctaaacaaacttcatctttaaataatcatcactccaa |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30701122 |
ttgaaagttcttgttacgatttagttggtatttgtatcttatttttcgggttaacattatctcctaaacaaacttcatctttaaataatcatcactccaa |
30701221 |
T |
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| Q |
274 |
gagtcacgtaccttagcaatctttccgtgcttctccaacactcaacaatactgctttttctatacataacaggtatatgttatttat |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30701222 |
gagtcacgtaccttagcaatctttccgtgcttctccaacactcaacaatactgctttttctatacataacaggtatatgttatttat |
30701308 |
T |
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