View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12521_low_19 (Length: 374)

Name: NF12521_low_19
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12521_low_19
NF12521_low_19
[»] chr5 (18 HSPs)
chr5 (139-258)||(5815041-5815160)
chr5 (287-354)||(5814944-5815012)
chr5 (139-258)||(18229572-18229691)
chr5 (139-234)||(9276574-9276669)
chr5 (142-258)||(16667262-16667378)
chr5 (143-258)||(8221143-8221258)
chr5 (139-231)||(30501137-30501229)
chr5 (139-231)||(30541480-30541572)
chr5 (143-232)||(7719225-7719314)
chr5 (139-258)||(30104821-30104940)
chr5 (139-258)||(39558737-39558856)
chr5 (170-256)||(23117199-23117285)
chr5 (178-245)||(7968446-7968513)
chr5 (139-234)||(17692279-17692374)
chr5 (139-215)||(40530448-40530524)
chr5 (143-258)||(8208200-8208315)
chr5 (139-258)||(34899107-34899225)
chr5 (142-214)||(3140834-3140906)
[»] scaffold0036 (1 HSPs)
scaffold0036 (139-258)||(62495-62614)
[»] chr4 (27 HSPs)
chr4 (139-256)||(7852516-7852633)
chr4 (153-258)||(8261139-8261244)
chr4 (153-258)||(8274556-8274661)
chr4 (139-241)||(35777686-35777788)
chr4 (139-234)||(47995731-47995826)
chr4 (139-243)||(8297888-8297992)
chr4 (139-216)||(49084412-49084490)
chr4 (143-258)||(45900119-45900234)
chr4 (139-258)||(50341837-50341956)
chr4 (139-258)||(53014176-53014295)
chr4 (143-237)||(31429298-31429392)
chr4 (151-258)||(36702813-36702916)
chr4 (197-258)||(23605637-23605698)
chr4 (139-234)||(37440843-37440938)
chr4 (139-234)||(41462066-41462161)
chr4 (139-234)||(42222972-42223067)
chr4 (139-258)||(50427006-50427125)
chr4 (143-258)||(51834935-51835050)
chr4 (139-213)||(20394655-20394728)
chr4 (141-258)||(31174621-31174738)
chr4 (139-214)||(7444399-7444475)
chr4 (170-234)||(13585255-13585319)
chr4 (152-216)||(27953053-27953117)
chr4 (139-234)||(24229640-24229735)
chr4 (139-234)||(34391701-34391796)
chr4 (155-232)||(37060581-37060659)
chr4 (170-242)||(24175385-24175457)
[»] chr7 (17 HSPs)
chr7 (143-258)||(28663109-28663224)
chr7 (139-258)||(21727376-21727495)
chr7 (139-258)||(27123291-27123410)
chr7 (139-258)||(28770494-28770613)
chr7 (152-258)||(35496543-35496649)
chr7 (139-240)||(43234807-43234908)
chr7 (139-258)||(44537358-44537477)
chr7 (143-258)||(39320952-39321067)
chr7 (146-243)||(7653600-7653697)
chr7 (144-245)||(43224070-43224171)
chr7 (170-258)||(14651360-14651448)
chr7 (143-234)||(25886191-25886282)
chr7 (175-234)||(48488172-48488231)
chr7 (143-258)||(3692898-3693014)
chr7 (170-234)||(9718988-9719052)
chr7 (173-239)||(40753936-40754002)
chr7 (139-258)||(42936024-42936139)
[»] chr1 (13 HSPs)
chr1 (139-234)||(47187815-47187910)
chr1 (143-258)||(2864164-2864277)
chr1 (139-256)||(44829289-44829405)
chr1 (139-240)||(39150599-39150700)
chr1 (142-258)||(44329616-44329732)
chr1 (172-258)||(34409784-34409869)
chr1 (139-215)||(48022366-48022442)
chr1 (139-193)||(39156278-39156332)
chr1 (142-215)||(8365523-8365596)
chr1 (143-239)||(38748710-38748806)
chr1 (152-258)||(43396985-43397091)
chr1 (225-258)||(39973866-39973899)
chr1 (198-258)||(31889239-31889299)
[»] chr2 (10 HSPs)
chr2 (139-240)||(9448942-9449042)
chr2 (139-237)||(19890180-19890278)
chr2 (139-258)||(31017278-31017397)
chr2 (139-258)||(31452317-31452435)
chr2 (142-258)||(1334854-1334970)
chr2 (142-258)||(15505564-15505680)
chr2 (139-254)||(34904762-34904877)
chr2 (146-258)||(37993102-37993214)
chr2 (152-215)||(1298976-1299039)
chr2 (143-256)||(41933152-41933265)
[»] chr6 (11 HSPs)
chr6 (142-258)||(32823697-32823813)
chr6 (139-258)||(17215653-17215772)
chr6 (172-258)||(30801791-30801877)
chr6 (142-214)||(1841003-1841075)
chr6 (139-258)||(28874416-28874535)
chr6 (152-234)||(31855084-31855166)
chr6 (142-215)||(26669292-26669365)
chr6 (139-234)||(7421689-7421784)
chr6 (142-191)||(1371201-1371250)
chr6 (142-191)||(1378949-1378998)
chr6 (140-193)||(34235413-34235466)
[»] chr8 (13 HSPs)
chr8 (139-234)||(27801220-27801315)
chr8 (139-234)||(1135178-1135273)
chr8 (139-258)||(42636336-42636455)
chr8 (139-257)||(4384107-4384224)
chr8 (142-214)||(3520822-3520894)
chr8 (147-234)||(28207649-28207737)
chr8 (143-258)||(33013066-33013180)
chr8 (141-189)||(16723234-16723282)
chr8 (142-214)||(35901951-35902023)
chr8 (170-258)||(37427239-37427326)
chr8 (139-258)||(12954745-12954864)
chr8 (178-232)||(12829867-12829921)
chr8 (170-243)||(2258076-2258149)
[»] chr3 (9 HSPs)
chr3 (139-258)||(29083869-29083989)
chr3 (152-214)||(24791526-24791588)
chr3 (144-231)||(40673456-40673543)
chr3 (139-214)||(42846019-42846095)
chr3 (172-234)||(51351327-51351389)
chr3 (143-239)||(26900012-26900109)
chr3 (226-258)||(11623573-11623605)
chr3 (139-215)||(12086776-12086852)
chr3 (143-215)||(39551869-39551940)
[»] scaffold1444 (1 HSPs)
scaffold1444 (206-258)||(887-939)
[»] scaffold0419 (1 HSPs)
scaffold0419 (139-258)||(1082-1201)
[»] scaffold0119 (1 HSPs)
scaffold0119 (142-215)||(1428-1501)


Alignment Details
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 5815160 - 5815041
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||| | | ||||||||||||||||||||| | |||||||||||||||| |||    
T  5815160 tagtaattattcatttaaaaatttaactaccacaatttccaatacattcaacatacatcttttcattaaaaacttactgctttaagtgcttaaagagtgc 5815061  T
Q  239 cccggagacactcgttaaca 258  Q
    |||  |  ||||||||||||    
T  5815060 cccaaaagcactcgttaaca 5815041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 5815012 - 5814944
Alignment:
Q  287 aagatgtatacatctaaatgaagtaatcatcaaaca-ttttctattgtgcctactcaagatactgacct 354  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  5815012 aagatgtatacatctaaatgaagtaatcatcaaacatttttctattgtgcctattcaagatactgacct 5814944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 18229691 - 18229572
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    |||||||||||| |||||||| | |||||  ||||||| |||||||||||||| | |  ||||||||||||||||||| ||| ||||||||||||| ||     
T  18229691 tagtaattattcttttaaaaagttaactattacaatttccaatacattcaataaacaatttttcattaaaaacttaccatttaaagtgcttaaagagtgt 18229592  T
Q  239 cccggagacactcgttaaca 258  Q
    ||||||  ||||||||||||    
T  18229591 cccggaagcactcgttaaca 18229572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 9276669 - 9276574
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaaga 234  Q
    |||||||||||  |||||||| |||||||  | |||||||||| ||||||||||||| |||||||||||||||||||  ||| |||||||||||||    
T  9276669 tagtaattatttttttaaaaaatcaactattataattttcaatgcattcaatacataacttttcattaaaaacttactatttaaagtgcttaaaga 9276574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 142 - 258
Target Start/End: Complemental strand, 16667378 - 16667262
Alignment:
Q  142 taattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgcccc 241  Q
    ||||||||| |||||||| |||| ||  ||||||| |||||||||||||||| |  ||||||||||||||||||  ||| ||||||||||| | ||  |     
T  16667378 taattattcttttaaaaagtcaattattacaatttccaatacattcaatacacaatttttcattaaaaacttactatttaaagtgcttaaaaagtgttct 16667279  T
Q  242 ggagacactcgttaaca 258  Q
    |||||||||||||||||    
T  16667278 ggagacactcgttaaca 16667262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 258
Target Start/End: Original strand, 8221143 - 8221258
Alignment:
Q  143 aattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgccccg 242  Q
    ||||||||  ||||||| |||||||  |||| ||||||| ||||||||||| |  |||| |||||||||||||  ||| || |||||||||||||| |||    
T  8221143 aattattctcttaaaaagtcaactattacaactttcaatgcattcaatacacaattttttattaaaaacttactatttaaaatgcttaaagaatgctccg 8221242  T
Q  243 gagacactcgttaaca 258  Q
    ||||||||| ||||||    
T  8221243 gagacactcattaaca 8221258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 30501229 - 30501137
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaa 231  Q
    |||||||||||| |||||||| |||| ||  ||||||| |||||||||||||||| | ||||||||| |||||||||  ||| ||||||||||    
T  30501229 tagtaattattcttttaaaaagtcaattattacaatttccaatacattcaatacacaacttttcatttaaaacttactatttaaagtgcttaa 30501137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 30541572 - 30541480
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaa 231  Q
    |||||||||||| |||||||| |||| ||  ||||||| |||||||||||||||| | ||||||||| |||||||||  ||| ||||||||||    
T  30541572 tagtaattattcttttaaaaagtcaattattacaatttccaatacattcaatacacaacttttcatttaaaacttactatttaaagtgcttaa 30541480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 7719225 - 7719314
Alignment:
Q  143 aattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaa 232  Q
    |||||||| |||||||| |||||||  ||||||| ||||| |||||||||| | ||||||||||||||||||   ||| |||||||||||    
T  7719225 aattattcttttaaaaaatcaactattacaatttccaatatattcaatacacaacttttcattaaaaacttattatttaaagtgcttaaa 7719314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 30104821 - 30104940
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    |||||| ||||  |||||||| ||||| |  ||||||| |||| ||||||||||| | ||||||||||||||||||||  || ||||| ||||||| |||    
T  30104821 tagtaactatttttttaaaaagtcaacaattacaatttccaatgcattcaatacacaacttttcattaaaaacttaccacttaaagtgtttaaagagtgc 30104920  T
Q  239 cccggagacactcgttaaca 258  Q
     |||| | |||| |||||||    
T  30104921 tccgggggcactagttaaca 30104940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 39558856 - 39558737
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    ||||||||||||||||||||||||||||   ||||||| |||| ||||  |||||   ||||||| |||||||||||  ||| || |||||||  | |||    
T  39558856 tagtaattattcatttaaaaattcaactgttacaatttccaatgcatttgatacacgacttttcaataaaaacttactatttaaaatgcttaagaagtgc 39558757  T
Q  239 cccggagacactcgttaaca 258  Q
     ||| |||||||||||||||    
T  39558756 tccgaagacactcgttaaca 39558737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 170 - 256
Target Start/End: Complemental strand, 23117285 - 23117199
Alignment:
Q  170 acaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgccccggagacactcgttaa 256  Q
    ||||||| ||||||||| ||||||||  ||||||||||||||||||  ||| || || ||||||||||| || |||||||| |||||    
T  23117285 acaatttccaatacatttaatacataatttttcattaaaaacttactatttaaaatgattaaagaatgctccagagacactagttaa 23117199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 7968446 - 7968513
Alignment:
Q  178 caatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgccccggag 245  Q
    |||| |||| |||||| | |||||||||||||||||||  ||| ||||||||||||| ||||||||||    
T  7968446 caatgcatttaatacacaacttttcattaaaaacttactatttaaagtgcttaaagagtgccccggag 7968513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 17692279 - 17692374
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaaga 234  Q
    ||||||||||||  ||||||| ||||||   |||||||||||| || | | |||| | ||||||||||||||| |||  |||||||||||||||||    
T  17692279 tagtaattattctcttaaaaagtcaactgttacaattttcaatgcaattactacacaacttttcattaaaaacctactattttaagtgcttaaaga 17692374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 40530524 - 40530448
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttac 215  Q
    |||||||||||  |||||||| | ||||| ||||||||  ||| ||||||||||| | || ||||||||||||||||    
T  40530524 tagtaattattattttaaaaagttaactatcacaatttctaattcattcaatacacaactattcattaaaaacttac 40530448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 258
Target Start/End: Original strand, 8208200 - 8208315
Alignment:
Q  143 aattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgccccg 242  Q
    |||||||| |||||||| |||| ||  |||||||| ||| |||||| |||||| ||||||||  |||||||| | ||| | ||| ||||||| | | |||    
T  8208200 aattattcttttaaaaagtcaattattacaatttttaatgcattcattacataacttttcatataaaacttatcatttaatgtgtttaaagagtactccg 8208299  T
Q  243 gagacactcgttaaca 258  Q
    ||  ||||||||||||    
T  8208300 gaagcactcgttaaca 8208315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 34899225 - 34899107
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    |||||||||||| ||||||||  ||| ||  |||||||  ||| |||| |||| ||| ||||||||| |||||||||  ||| ||||| ||||||| |||    
T  34899225 tagtaattattcttttaaaaagacaattattacaatttctaatgcatttaatatataacttttcatttaaaacttactatttaaagtgtttaaagagtgc 34899126  T
Q  239 cccggagacactcgttaaca 258  Q
    || || | ||||||||||||    
T  34899125 cctggtg-cactcgttaaca 34899107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 3140834 - 3140906
Alignment:
Q  142 taattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaactta 214  Q
    ||||||||| |||||||| |||||||  |||||||||||| |||| |||| | | ||||| ||| ||||||||    
T  3140834 taattattcttttaaaaagtcaactattacaattttcaattcatttaatatacaactttttatttaaaactta 3140906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 62614 - 62495
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    |||||||||||| |||||||| |||||||  || ||||||||| |||||||||||||  |||| |||||||||||||  ||| ||||||||||||| | |    
T  62614 tagtaattattcttttaaaaagtcaactattacgattttcaatgcattcaatacataattttttattaaaaacttactatttaaagtgcttaaagagtac 62515  T
Q  239 cccggagacactcgttaaca 258  Q
    ||||||||||||||||||||    
T  62514 cccggagacactcgttaaca 62495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 139 - 256
Target Start/End: Complemental strand, 7852633 - 7852516
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    |||||||||||| |||||||| | |||||  |||||||||||| |||| |||||| | |||||||||||||||||||  ||| ||||||||||||| |||    
T  7852633 tagtaattattcttttaaaaaattaactattacaattttcaatgcatttaatacacaacttttcattaaaaacttactatttaaagtgcttaaagagtgc 7852534  T
Q  239 cccggagacactcgttaa 256  Q
    ||||| | ||||||||||    
T  7852533 cccggtggcactcgttaa 7852516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 153 - 258
Target Start/End: Original strand, 8261139 - 8261244
Alignment:
Q  153 ttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgccccggagacactcg 252  Q
    ||||||| ||||||   |||||||||||| |||| |||||||| |||||||||||||||||||  ||| |||||||| |||| |||||| ||||||||||    
T  8261139 ttaaaaagtcaactgttacaattttcaatgcatttaatacataacttttcattaaaaacttactatttaaagtgcttgaagagtgccccagagacactcg 8261238  T
Q  253 ttaaca 258  Q
    ||||||    
T  8261239 ttaaca 8261244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 153 - 258
Target Start/End: Original strand, 8274556 - 8274661
Alignment:
Q  153 ttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgccccggagacactcg 252  Q
    ||||||| ||||||   |||||||||||| |||| |||||||| |||||||||||||||||||  ||| |||||||| |||| |||||| ||||||||||    
T  8274556 ttaaaaagtcaactgttacaattttcaatgcatttaatacataacttttcattaaaaacttactatttaaagtgcttgaagagtgccccagagacactcg 8274655  T
Q  253 ttaaca 258  Q
    ||||||    
T  8274656 ttaaca 8274661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 139 - 241
Target Start/End: Complemental strand, 35777788 - 35777686
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    |||||||||||| |||||||| | |||||  |||||||  ||| ||||||||||| | |||||||||||||||||||| ||| ||||||||||||||| |    
T  35777788 tagtaattattcttttaaaaagttaactattacaatttctaatgcattcaatacacaacttttcattaaaaacttaccatttaaagtgcttaaagaatac 35777689  T
Q  239 ccc 241  Q
    |||    
T  35777688 ccc 35777686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 47995826 - 47995731
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaaga 234  Q
    ||||||||| || |||||||| | || ||  |||||||||||| ||||||||||||| |||||||||||||||||||  ||| |||||||||||||    
T  47995826 tagtaattactcttttaaaaagttaattattacaattttcaatgcattcaatacataacttttcattaaaaacttacaatttaaagtgcttaaaga 47995731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 8297888 - 8297992
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    |||||||||||| |||||||  ||||||   ||||||| |||| ||||||||||| |  ||||||||||||||||||  ||| ||||||||||||| |||    
T  8297888 tagtaattattcttttaaaatgtcaactgttacaatttccaatgcattcaatacacaatttttcattaaaaacttactatttaaagtgcttaaagattgc 8297987  T
Q  239 cccgg 243  Q
    |||||    
T  8297988 cccgg 8297992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 49084490 - 49084412
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaat-acattcaatacatatcttttcattaaaaacttacc 216  Q
    |||||||||||| |||||||| |||||||  |||||||||||| | |||||||||| | ||||||||||||||||||||    
T  49084490 tagtaattattcttttaaaaagtcaactattacaattttcaatgaaattcaatacacaacttttcattaaaaacttacc 49084412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 258
Target Start/End: Complemental strand, 45900234 - 45900119
Alignment:
Q  143 aattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgccccg 242  Q
    |||||||| |||| ||| ||||||| |||||||| |||| ||||||||||| | ||||||||   ||||||||   || ||||||||||||| ||||||     
T  45900234 aattattcttttataaagtcaactatcacaatttccaatgcattcaatacacaacttttcatatgaaacttactaattaaagtgcttaaagagtgccccc 45900135  T
Q  243 gagacactcgttaaca 258  Q
    | | ||||||||||||    
T  45900134 ggggcactcgttaaca 45900119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 50341956 - 50341837
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    |||||||||||| |||||||| |||||||  ||||||| |||  ||||||||||| | ||||||||| |||| ||||  | | ||||||||||||| | |    
T  50341956 tagtaattattcttttaaaaagtcaactattacaatttccaacgcattcaatacacaacttttcatttaaaatttactatataaagtgcttaaagagtac 50341857  T
Q  239 cccggagacactcgttaaca 258  Q
    |||| | ||||| |||||||    
T  50341856 cccgaaaacacttgttaaca 50341837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 53014295 - 53014176
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    ||||||||||   |||||||| | |||||  ||||||| |||||||||||||||| | ||||| ||||||||| |||| ||| |||||||||| ||||      
T  53014295 tagtaattatctttttaaaaaattaactattacaatttccaatacattcaatacacaactttttattaaaaacataccatttaaagtgcttaacgaattt 53014196  T
Q  239 cccggagacactcgttaaca 258  Q
    |||| || ||||| ||||||    
T  53014195 cccgaaggcactcattaaca 53014176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 143 - 237
Target Start/End: Original strand, 31429298 - 31429392
Alignment:
Q  143 aattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatg 237  Q
    |||||||| |||||||| |||||||  ||||||| |||| ||||||||||| | ||||||||| |||||||||   || ||||||||||| ||||    
T  31429298 aattattcttttaaaaaatcaactattacaatttccaatgcattcaatacacaacttttcatttaaaacttactaattaaagtgcttaaaaaatg 31429392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 151 - 258
Target Start/End: Original strand, 36702813 - 36702916
Alignment:
Q  151 atttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgccccggagacact 250  Q
    ||||||||| |||| ||  |||||||||||| ||||||||||| |  |||||||||||||||||    || ||||||||||||| || |||||||  |||    
T  36702813 atttaaaaagtcaattattacaattttcaatgcattcaatacacaatttttcattaaaaactta----ttaaagtgcttaaagagtgtcccggaggaact 36702908  T
Q  251 cgttaaca 258  Q
    ||||||||    
T  36702909 cgttaaca 36702916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 23605698 - 23605637
Alignment:
Q  197 cttttcattaaaaacttaccgttttaagtgcttaaagaatgccccggagacactcgttaaca 258  Q
    |||||||||||||||||||| ||| ||||||||||| | |  ||||||||||||||||||||    
T  23605698 cttttcattaaaaacttaccatttaaagtgcttaaaaagtatcccggagacactcgttaaca 23605637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 37440843 - 37440938
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaaga 234  Q
    |||||||||||  |||||||| |||||||  ||||||||||||   |||||||||||  ||||||||| ||| ||||| ||| |||| ||||||||    
T  37440843 tagtaattattattttaaaaagtcaactattacaattttcaatgtgttcaatacataatttttcattataaatttaccatttaaagtacttaaaga 37440938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 41462066 - 41462161
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaaga 234  Q
    |||||||||||| |||||||| |||||||  |||||||   || |||| ||||||||  ||||||||||||||||||  ||| || ||||||||||    
T  41462066 tagtaattattcttttaaaaagtcaactattacaatttcttatgcatttaatacataatttttcattaaaaacttactatttaaaatgcttaaaga 41462161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 42222972 - 42223067
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaaga 234  Q
    |||||| |||| |||||||||  ||||||  | |||||||||| ||||||||||| |  |||| ||||||||||||||  ||||||| ||||||||    
T  42222972 tagtaactatttatttaaaaaaccaactattataattttcaatgcattcaatacacaattttttattaaaaacttaccactttaagtacttaaaga 42223067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 50427006 - 50427125
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    |||||||||||| ||| |||| |||||||  ||||||| |||| || |||| ||| | |||||||||||||| ||||  ||| ||||| ||||||| |||    
T  50427006 tagtaattattcttttgaaaagtcaactattacaatttccaatgcaatcaacacacaacttttcattaaaaatttactatttaaagtgtttaaagagtgc 50427105  T
Q  239 cccggagacactcgttaaca 258  Q
    | | | | ||||||||||||    
T  50427106 cacaggggcactcgttaaca 50427125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 258
Target Start/End: Original strand, 51834935 - 51835050
Alignment:
Q  143 aattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgccccg 242  Q
    |||||||| |||||||| |||||||  | ||||| |||| |||| |||||| | |||||||||||||| ||||  ||| ||||| ||||||| || | ||    
T  51834935 aattattcttttaaaaagtcaactattataatttccaatgcattaaatacacaacttttcattaaaaatttactatttaaagtgtttaaagagtgtctcg 51835034  T
Q  243 gagacactcgttaaca 258  Q
    |  |||||||||||||    
T  51835035 ggaacactcgttaaca 51835050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 20394655 - 20394728
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaactt 213  Q
    |||||||||||| |||||||| | |||||  ||||||| |||||||||||||||| |  ||||||||||||||||    
T  20394655 tagtaattattcttttaaaaagtgaactattacaatttccaatacattcaataca-acattttcattaaaaactt 20394728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 258
Target Start/End: Complemental strand, 31174738 - 31174621
Alignment:
Q  141 gtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgccc 240  Q
    |||||||||| |||||||| | ||||   ||||||||||||| ||||| |||| | |||||||||||||| ||| | ||| ||||  |||||||||  ||    
T  31174738 gtaattattcttttaaaaagttaactgttacaattttcaatatattcattacacaacttttcattaaaaatttatcatttaaagtatttaaagaatatcc 31174639  T
Q  241 cggagacactcgttaaca 258  Q
    | ||  ||||||||||||    
T  31174638 cagaagcactcgttaaca 31174621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 7444475 - 7444399
Alignment:
Q  139 tagtaattattcatttaaaaat-tcaactaccacaattttcaatacattcaatacatatcttttcattaaaaactta 214  Q
    |||||||||| | ||||||||  |||||||  |||||||||||| ||||||||||| | |||||| |||||||||||    
T  7444475 tagtaattatacttttaaaaaagtcaactattacaattttcaatgcattcaatacacaacttttctttaaaaactta 7444399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 13585319 - 13585255
Alignment:
Q  170 acaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaaga 234  Q
    ||||||||||||  ||||| |||||| ||||||||  |||||||||| ||| |||||||||||||    
T  13585319 acaattttcaatgtattcattacataacttttcatataaaacttaccatttaaagtgcttaaaga 13585255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 27953117 - 27953053
Alignment:
Q  152 tttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttacc 216  Q
    |||||||| | |||||  |||||||||||| ||||||||||| | |||||| |||||||||||||    
T  27953117 tttaaaaagttaactattacaattttcaatgcattcaatacacaacttttcgttaaaaacttacc 27953053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 24229735 - 24229640
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaaga 234  Q
    |||||||||||| ||| |||| | || || ||||||||||||| |||| |||||| |  ||||||||||||||||    ||| |||||||||||||    
T  24229735 tagtaattattctttttaaaagtaaattatcacaattttcaatgcatttaatacacaatttttcattaaaaactttttatttaaagtgcttaaaga 24229640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 34391796 - 34391701
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaaga 234  Q
    |||||||||||| |||| ||| |||  ||  ||||||| |||| || |||||||| | ||||| |||||||||||||  ||||||||| |||||||    
T  34391796 tagtaattattcttttataaagtcagttattacaatttccaatgcaatcaatacacaactttttattaaaaacttactattttaagtgtttaaaga 34391701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 37060581 - 37060659
Alignment:
Q  155 aaaaattcaactaccacaattttcaatacattcaatacata-tcttttcattaaaaacttaccgttttaagtgcttaaa 232  Q
    ||||| |||||||  | |||||||||| || | |||||||| | ||||||||||||||||||| ||| |||||||||||    
T  37060581 aaaaaatcaactattataattttcaatgcaattaatacataattttttcattaaaaacttaccatttaaagtgcttaaa 37060659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 24175457 - 24175385
Alignment:
Q  170 acaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgccccg 242  Q
    |||||||| ||| |||| |||||| | |||||| |  |||||||||| ||| ||||||||||||| |||||||    
T  24175457 acaattttaaatgcatttaatacacaacttttcgtacaaaacttaccatttaaagtgcttaaagagtgccccg 24175385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 143 - 258
Target Start/End: Complemental strand, 28663224 - 28663109
Alignment:
Q  143 aattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgccccg 242  Q
    |||||||| |||||||| |||||||  |||||||||||| ||||||||||| |  |||||||||||| |||||  ||| ||||||||||||| |||||||    
T  28663224 aattattcttttaaaaagtcaactattacaattttcaatgcattcaatacacaatttttcattaaaaccttactatttaaagtgcttaaagagtgccccg 28663125  T
Q  243 gagacactcgttaaca 258  Q
    ||| || |||||||||    
T  28663124 gaggcattcgttaaca 28663109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 21727495 - 21727376
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    |||||||||||| |||||||| |||||||  ||||||| |||||||||||||||| |  | || |||||||||||| | ||| ||||||||||||| |||    
T  21727495 tagtaattattcttttaaaaagtcaactattacaatttccaatacattcaatacacaaatatttattaaaaacttatcatttgaagtgcttaaagagtgc 21727396  T
Q  239 cccggagacactcgttaaca 258  Q
    |||  || ||||||||||||    
T  21727395 cccaaaggcactcgttaaca 21727376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 27123291 - 27123410
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    ||||||| |||| |||||||| |||||||  ||||||| |||| |||| | |||| | |||||| ||||||||||||| ||| ||||||||||||| |||    
T  27123291 tagtaatcattcttttaaaaagtcaactattacaatttccaatgcattaagtacacaacttttcgttaaaaacttaccatttaaagtgcttaaagagtgc 27123390  T
Q  239 cccggagacactcgttaaca 258  Q
    ||||| | ||||||||||||    
T  27123391 cccgggggcactcgttaaca 27123410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 28770494 - 28770613
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    |||||||||||| ||| |||| |||||||  ||||||| |||| ||||||||||| | |||||||||||||||||||  |||  |||||||||||| ||     
T  28770494 tagtaattattcttttgaaaagtcaactattacaatttccaatgcattcaatacacaacttttcattaaaaacttactatttagagtgcttaaagagtgt 28770593  T
Q  239 cccggagacactcgttaaca 258  Q
     |||||| ||||||||||||    
T  28770594 tccggaggcactcgttaaca 28770613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 152 - 258
Target Start/End: Complemental strand, 35496649 - 35496543
Alignment:
Q  152 tttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgccccggagacactc 251  Q
    |||||||| |||||||  |||||||||||| |||||| |||| |  ||||||||||||||||||| ||| ||||| ||||||| |||||||| | |||||    
T  35496649 tttaaaaagtcaactattacaattttcaatgcattcattacacaatttttcattaaaaacttaccatttaaagtgtttaaagagtgccccgggggcactc 35496550  T
Q  252 gttaaca 258  Q
    |||||||    
T  35496549 gttaaca 35496543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 139 - 240
Target Start/End: Original strand, 43234807 - 43234908
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    |||||||||||| |||||||| | |||||  ||||||| || ||||||||||||||| |||||||||||||| ||||  ||| ||||||||||||| |||    
T  43234807 tagtaattattcttttaaaaaataaactattacaatttccattacattcaatacataacttttcattaaaaatttactatttaaagtgcttaaagagtgc 43234906  T
Q  239 cc 240  Q
    ||    
T  43234907 cc 43234908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 44537358 - 44537477
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    |||||||||||| |||||||| |||||||  | ||||| || |  ||  |||||||| |||||||||||||||||||  ||| ||||||||||||| |||    
T  44537358 tagtaattattcttttaaaaagtcaactattataatttccattgtatataatacataacttttcattaaaaacttactatttaaagtgcttaaagagtgc 44537457  T
Q  239 cccggagacactcgttaaca 258  Q
    ||||| | ||||||||||||    
T  44537458 cccgggggcactcgttaaca 44537477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 258
Target Start/End: Complemental strand, 39321067 - 39320952
Alignment:
Q  143 aattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgccccg 242  Q
    |||||||| |||||||| |||||||  ||||||||||||  |||||||||| | ||||| || ||||||||||   || ||||||||||||| || | |     
T  39321067 aattattcttttaaaaagtcaactattacaattttcaatgtattcaatacacaacttttaataaaaaacttactaattaaagtgcttaaagagtgtctca 39320968  T
Q  243 gagacactcgttaaca 258  Q
     |||||||||||||||    
T  39320967 aagacactcgttaaca 39320952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 243
Target Start/End: Original strand, 7653600 - 7653697
Alignment:
Q  146 tattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgccccgg 243  Q
    ||||| |||||||| |||||||  | ||||| |||| |||||| |||| | |||||||||||||||||||  ||| ||||||||||||| || |||||    
T  7653600 tattcttttaaaaagtcaactattataatttccaattcattcattacacaacttttcattaaaaacttactttttaaagtgcttaaagagtgtcccgg 7653697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 245
Target Start/End: Complemental strand, 43224171 - 43224070
Alignment:
Q  144 attattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgccccgg 243  Q
    ||||||| |||||||| ||||||   ||||||| ||||  ||  |||||| | ||||||||||||||||| |  ||| ||||||||||||||||||||||    
T  43224171 attattcttttaaaaagtcaactgttacaatttccaatgtatgtaatacacaacttttcattaaaaacttgctatttaaagtgcttaaagaatgccccgg 43224072  T
Q  244 ag 245  Q
    ||    
T  43224071 ag 43224070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 14651448 - 14651360
Alignment:
Q  170 acaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgccccggagacactcgttaaca 258  Q
    ||||||| |||| || ||| |||| | ||||||||||||||| |||  ||||||||||||||||| |||||||  | ||||||||||||    
T  14651448 acaatttccaatgcaatcattacacaacttttcattaaaaacctactattttaagtgcttaaagagtgccccgagggcactcgttaaca 14651360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 25886191 - 25886282
Alignment:
Q  143 aattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaaga 234  Q
    ||||||||  ||| ||| |||||||  ||||||||||||||||| |||||| | ||||||||  |||||||||| ||| ||||| |||||||    
T  25886191 aattattctcttagaaagtcaactattacaattttcaatacatttaatacacaacttttcatataaaacttaccatttaaagtgtttaaaga 25886282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 48488231 - 48488172
Alignment:
Q  175 tttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaaga 234  Q
    ||||||| |||| |||||||| |||||||||||||||||| | ||| |||||||||||||    
T  48488231 tttcaatgcattgaatacataacttttcattaaaaacttatcatttaaagtgcttaaaga 48488172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 258
Target Start/End: Original strand, 3692898 - 3693014
Alignment:
Q  143 aattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaa-cttaccgttttaagtgcttaaagaatgcccc 241  Q
    |||||||| |||||||| |||||||  ||||||| |||| || |||||||| |  ||||||| ||||| |||||   || || | |||||||| ||||||    
T  3692898 aattattcttttaaaaaatcaactattacaatttccaatgcactcaatacacaatttttcataaaaaaacttactaattaaaatacttaaagagtgcccc 3692997  T
Q  242 ggagacactcgttaaca 258  Q
    ||| |||||||||||||    
T  3692998 ggaaacactcgttaaca 3693014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 9719052 - 9718988
Alignment:
Q  170 acaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaaga 234  Q
    ||||||||||||  ||||| |||||| ||||||||  |||||||||| ||| |||||||||||||    
T  9719052 acaattttcaatgtattcattacataacttttcatataaaacttaccatttaaagtgcttaaaga 9718988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 40754002 - 40753936
Alignment:
Q  173 attttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgcc 239  Q
    |||||||||||||| |||||| | |||||||||||||||||| | ||| || || ||||||| ||||    
T  40754002 attttcaatacatttaatacacaacttttcattaaaaacttatcatttaaaatgtttaaagagtgcc 40753936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 42936024 - 42936139
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    |||||||||||| |||||||| |||||||  |||| ||||||| |||| |||||| |  |||||||| ||||||| |  ||| |||||  ||||||||||    
T  42936024 tagtaattattcttttaaaaaatcaactattacaa-tttcaatgcatttaatacacaatttttcatt-aaaacttgctatttaaagtgtataaagaatgc 42936121  T
Q  239 cccggagacactcgttaaca 258  Q
    ||||   |||||||||||||    
T  42936122 cccg--aacactcgttaaca 42936139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 47187910 - 47187815
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaaga 234  Q
    ||||||||||||||||||||| |||||||  | ||||| |||| |||||||||||||  ||||||||||||||||||| ||||||||| |||||||    
T  47187910 tagtaattattcatttaaaaaatcaactattataatttccaatgcattcaatacataatttttcattaaaaacttaccattttaagtgtttaaaga 47187815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 258
Target Start/End: Original strand, 2864164 - 2864277
Alignment:
Q  143 aattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgccccg 242  Q
    |||||||| |||||||| |||||||  ||||||| |||| ||||||||||| | |||||||||||||||||||  ||| ||||||||||||| ||| |||    
T  2864164 aattattc-tttaaaaagtcaactattacaatttccaatgcattcaatacacaacttttcattaaaaacttactatttaaagtgcttaaagagtgctccg 2864262  T
Q  243 gagacactcgttaaca 258  Q
    | | ||||||||||||    
T  2864263 g-ggcactcgttaaca 2864277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 139 - 256
Target Start/End: Original strand, 44829289 - 44829405
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    |||||||||||| || ||||  |||||||  |||||||| ||||||||||||||| | ||||| ||| ||||||||||| || |||| |||||||| ||     
T  44829289 tagtaattattctttaaaaaggtcaactattacaatttttaatacattcaatacacaactttttatt-aaaacttaccgattaaagtacttaaagagtgt 44829387  T
Q  239 cccggagacactcgttaa 256  Q
    |||||| |||||||||||    
T  44829388 cccggaaacactcgttaa 44829405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 139 - 240
Target Start/End: Original strand, 39150599 - 39150700
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    |||||||||||| | |||||| |||||||  ||||||| |||| |||||||||||||  |||||||||||| |||||   || ||||||||||||| |||    
T  39150599 tagtaattattcttgtaaaaagtcaactattacaatttacaatgcattcaatacataaattttcattaaaatcttactagttaaagtgcttaaagagtgc 39150698  T
Q  239 cc 240  Q
    ||    
T  39150699 cc 39150700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 258
Target Start/End: Original strand, 44329616 - 44329732
Alignment:
Q  142 taattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgcccc 241  Q
    ||||||||| |||||||| |||||||  | |||||||||| |||||||||||||  |||| | ||||||||| |  ||| ||||| |||||||||| |      
T  44329616 taattattcttttaaaaagtcaactattataattttcaatgcattcaatacataattttttactaaaaactttctatttaaagtgtttaaagaatgtcgt 44329715  T
Q  242 ggagacactcgttaaca 258  Q
    ||| |||||||||||||    
T  44329716 ggaaacactcgttaaca 44329732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 34409784 - 34409869
Alignment:
Q  172 aattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgccccggagacactcgttaaca 258  Q
    ||||| |||| ||||||||||| || ||||||||||||||||||| ||| |||||| ||||||||| ||| ||  ||||||||||||    
T  34409784 aatttccaatgcattcaatacacat-ttttcattaaaaacttaccatttaaagtgcataaagaatgtcccagaagcactcgttaaca 34409869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 48022442 - 48022366
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttac 215  Q
    |||||||||||  |||||||| | |||||   ||||||||||| |||||||||||||| |||| |||||||||||||    
T  48022442 tagtaattattgttttaaaaagttaactattgcaattttcaatgcattcaatacatatttttttattaaaaacttac 48022366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 39156278 - 39156332
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaataca 193  Q
    |||||||||||| |||||||| |||||||| ||||||| |||| |||||||||||    
T  39156278 tagtaattattcttttaaaaagtcaactactacaatttccaatgcattcaataca 39156332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 8365523 - 8365596
Alignment:
Q  142 taattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttac 215  Q
    ||||||||| |||||||| |||||||  ||||| |||||| ||||||||||||   |||||| |||||||||||    
T  8365523 taattattcttttaaaaaatcaactattacaatcttcaatgcattcaatacatcatttttcaataaaaacttac 8365596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 239
Target Start/End: Complemental strand, 38748806 - 38748710
Alignment:
Q  143 aattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgcc 239  Q
    |||||||| |||||||| |||||||  | |||||||||| || |||||||| | |||||||| || |||||||   || ||||||||||||| ||||    
T  38748806 aattattcttttaaaaagtcaactattataattttcaatgcactcaatacacaacttttcataaataacttactaattaaagtgcttaaagagtgcc 38748710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 258
Target Start/End: Complemental strand, 43397091 - 43396985
Alignment:
Q  152 tttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgccccggagacactc 251  Q
    |||||||| |||||||  | ||||| |||| |||| |||||| | |||||||||||||||||||  ||| ||||| |||| || ||| |||  | |||||    
T  43397091 tttaaaaagtcaactattataatttccaatgcatttaatacacaacttttcattaaaaacttactatttaaagtgtttaacgagtgcgccgagggcactc 43396992  T
Q  252 gttaaca 258  Q
    |||||||    
T  43396991 gttaaca 43396985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 258
Target Start/End: Complemental strand, 39973899 - 39973866
Alignment:
Q  225 tgcttaaagaatgccccggagacactcgttaaca 258  Q
    |||||||||| |||||||||||||||||||||||    
T  39973899 tgcttaaagagtgccccggagacactcgttaaca 39973866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 31889239 - 31889299
Alignment:
Q  198 ttttcattaaaaacttaccgttttaagtgcttaaagaatgccccggagacactcgttaaca 258  Q
    ||||||||||||||||||| ||| || |||||||||| ||| |  || |||||||||||||    
T  31889239 ttttcattaaaaacttaccatttaaaatgcttaaagagtgcactagaaacactcgttaaca 31889299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 139 - 240
Target Start/End: Complemental strand, 9449042 - 9448942
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    |||||||||||| ||||||||| ||||||  | |||||||||||||||||||||| | |||||||||||||||||||| ||| ||||| ||||||| |||    
T  9449042 tagtaattattcttttaaaaat-caactattataattttcaatacattcaatacacaacttttcattaaaaacttaccatttaaagtgtttaaagagtgc 9448944  T
Q  239 cc 240  Q
    ||    
T  9448943 cc 9448942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 139 - 237
Target Start/End: Complemental strand, 19890278 - 19890180
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatg 237  Q
    |||||||||||| |||||||| |||||||  ||||||| |||| |||| |||||| | ||||||||||||||||||   ||||||||||||||||||||    
T  19890278 tagtaattattcttttaaaaagtcaactattacaatttccaatgcatttaatacacaacttttcattaaaaacttattattttaagtgcttaaagaatg 19890180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 31017397 - 31017278
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    |||||||||||| || ||||| |||| ||    |||||||||| |||| |||||| | |||||||||||||||||  | ||| |||||||||||||||||    
T  31017397 tagtaattattctttaaaaaagtcaaatattttaattttcaatgcatttaatacacaacttttcattaaaaacttttcatttaaagtgcttaaagaatgc 31017298  T
Q  239 cccggagacactcgttaaca 258  Q
    |||| || ||||||||||||    
T  31017297 cccgaaggcactcgttaaca 31017278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 31452435 - 31452317
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    |||||||||||| |||||||| ||||| |  |||||||||||| ||||||||||| | ||||| |||||||||||||  ||| ||||||||||| ||||     
T  31452435 tagtaattattcttttaaaaagtcaacaattacaattttcaatgcattcaatacacaactttt-attaaaaacttactatttaaagtgcttaaataatgt 31452337  T
Q  239 cccggagacactcgttaaca 258  Q
     ||||  |||||||||||||    
T  31452336 tccgggaacactcgttaaca 31452317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 258
Target Start/End: Complemental strand, 1334970 - 1334854
Alignment:
Q  142 taattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgcccc 241  Q
    ||||||||| || ||||| |||||||  ||||||| |||| ||||||||| | |  ||||||||||||||||| | ||| ||||||||||||| ||| ||    
T  1334970 taattattctttaaaaaaatcaactattacaatttccaatgcattcaatatacaatttttcattaaaaacttatcatttaaagtgcttaaagagtgctcc 1334871  T
Q  242 ggagacactcgttaaca 258  Q
    || |||| |||||||||    
T  1334870 ggggacaatcgttaaca 1334854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 258
Target Start/End: Original strand, 15505564 - 15505680
Alignment:
Q  142 taattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgcccc 241  Q
    ||||||||| || ||||| | |||||  | |||||||||||||||||||||| | |||||||||  ||||||||  ||| ||||| || |||| |||| |    
T  15505564 taattattctttcaaaaagtaaactattataattttcaatacattcaatacacaacttttcattccaaacttactatttaaagtgtttcaagagtgccac 15505663  T
Q  242 ggagacactcgttaaca 258  Q
     ||||||||||||||||    
T  15505664 agagacactcgttaaca 15505680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 254
Target Start/End: Complemental strand, 34904877 - 34904762
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    |||||||||||| |||||||| |||||||  |||||||| |||  ||| |||||| |  |||||||||| |||||||  ||| ||||||||||||| |||    
T  34904877 tagtaattattcttttaaaaaatcaactattacaatttttaatgaatttaatacaaaatttttcattaataacttacaatttaaagtgcttaaagagtgc 34904778  T
Q  239 cccggagacactcgtt 254  Q
     |||||  ||||||||    
T  34904777 tccggaagcactcgtt 34904762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 258
Target Start/End: Original strand, 37993102 - 37993214
Alignment:
Q  146 tattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgccccggag 245  Q
    ||||| || ||||| |||||||  |||||||||||| |||| ||||||||  |||| |||||||| ||||  ||| || || |||||||||||  | |||    
T  37993102 tattctttcaaaaaatcaactattacaattttcaatgcatttaatacataattttttattaaaaatttactatttaaaatgtttaaagaatgcttcagag 37993201  T
Q  246 acactcgttaaca 258  Q
    |||||| ||||||    
T  37993202 acactctttaaca 37993214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 1299039 - 1298976
Alignment:
Q  152 tttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttac 215  Q
    |||||||| ||||||| ||||||||||| |  ||| |||||||| |||||||||||||| ||||    
T  1299039 tttaaaaagtcaactatcacaattttcactgtatttaatacataacttttcattaaaaatttac 1298976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 256
Target Start/End: Original strand, 41933152 - 41933265
Alignment:
Q  143 aattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgccccg 242  Q
    |||||||| |||||||| |||||||  |||||||||||| || ||| || | | ||||| || ||||| ||||   || ||||||||||||| ||| |||    
T  41933152 aattattcttttaaaaagtcaactattacaattttcaatgcactcagtaaacaactttttataaaaaatttactaattaaagtgcttaaagagtgctccg 41933251  T
Q  243 gagacactcgttaa 256  Q
    |  |||||||||||    
T  41933252 ggaacactcgttaa 41933265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 142 - 258
Target Start/End: Original strand, 32823697 - 32823813
Alignment:
Q  142 taattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgcccc 241  Q
    ||||||||| ||| |||| |||| ||  |||||||||||| ||||||||||| | |||||||||||||||||    ||| ||||||||||||| ||| ||    
T  32823697 taattattcttttgaaaagtcaattattacaattttcaatgcattcaatacacaacttttcattaaaaacttgttatttaaagtgcttaaagagtgctcc 32823796  T
Q  242 ggagacactcgttaaca 258  Q
    |||| ||||||||||||    
T  32823797 ggaggcactcgttaaca 32823813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 17215772 - 17215653
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    |||||||||||  |||||||| |||||||  |||||||||||| ||||||||| | |  |||| |||||||||||||| ||| ||||||||||||| ||     
T  17215772 tagtaattatttttttaaaaagtcaactattacaattttcaatgcattcaataaacaattttttattaaaaacttaccatttaaagtgcttaaagagtga 17215673  T
Q  239 cccggagacactcgttaaca 258  Q
     ||| || ||||||||||||    
T  17215672 tccgaaggcactcgttaaca 17215653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 30801791 - 30801877
Alignment:
Q  172 aattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgccccggagacactcgttaaca 258  Q
    |||||||||| ||||||||||| | ||||| ||||||||||| |  ||| |||||||||||||||| ||||| |  |||||||||||    
T  30801791 aattttcaatgcattcaatacacaacttttaattaaaaacttgctatttaaagtgcttaaagaatgtcccgggggtactcgttaaca 30801877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 1841003 - 1841075
Alignment:
Q  142 taattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaactta 214  Q
    ||||||||| |||||||| |||||||  ||||||| |||| ||||||||||| | ||||| ||||||||||||    
T  1841003 taattattcttttaaaaaatcaactattacaatttccaatgcattcaatacacaacttttaattaaaaactta 1841075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 28874416 - 28874535
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    |||||||||||| ||| |||| |||||||  | ||||| |||| ||||||||||| |  ||||||||||||||||    ||| || || |||||||||      
T  28874416 tagtaattattcttttgaaaaatcaactattataatttccaatgcattcaatacaaaatttttcattaaaaacttgttatttaaaatgtttaaagaatat 28874515  T
Q  239 cccggagacactcgttaaca 258  Q
    ||||||| ||||||||||||    
T  28874516 cccggaggcactcgttaaca 28874535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 31855084 - 31855166
Alignment:
Q  152 tttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaaga 234  Q
    |||||||| |||||||  ||||||| |||| ||||||||| | |  ||||||||||||||||||  ||| |||||||||||||    
T  31855084 tttaaaaagtcaactattacaatttccaatgcattcaatatacaatttttcattaaaaacttactatttaaagtgcttaaaga 31855166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 26669365 - 26669292
Alignment:
Q  142 taattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttac 215  Q
    ||||||||| |||||||| |||||||  |||||||||| |  ||| |||||||| |||||||||||||| ||||    
T  26669365 taattattcttttaaaaagtcaactattacaattttcactgtatttaatacataacttttcattaaaaatttac 26669292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 7421689 - 7421784
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaaga 234  Q
    ||||||||||| ||||||||| |||| ||  |||||||||||| |||| |||||| | ||||| | |||||  ||||  ||| |||||||||||||    
T  7421689 tagtaattatttatttaaaaagtcaaatattacaattttcaatgcatttaatacacaactttttaataaaactttactatttaaagtgcttaaaga 7421784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 1371250 - 1371201
Alignment:
Q  142 taattattcatttaaaaattcaactaccacaattttcaatacattcaata 191  Q
    ||||||||| |||||||| |||||| |||||||||||||| |||| ||||    
T  1371250 taattattcttttaaaaagtcaacttccacaattttcaatgcattgaata 1371201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 1378998 - 1378949
Alignment:
Q  142 taattattcatttaaaaattcaactaccacaattttcaatacattcaata 191  Q
    ||||||||| |||||||| |||||| |||||||||||||| |||| ||||    
T  1378998 taattattcttttaaaaagtcaacttccacaattttcaatgcattgaata 1378949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 34235466 - 34235413
Alignment:
Q  140 agtaattattcatttaaaaattcaactaccacaattttcaatacattcaataca 193  Q
    ||||||||||| |||||||| | |||||  ||||||||||||||||| ||||||    
T  34235466 agtaattattcttttaaaaaattaactattacaattttcaatacatttaataca 34235413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 27801315 - 27801220
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaaga 234  Q
    |||||||||||| |||||||| |||||||  |||||||||||| |||||| |||| | ||||| |||||||||||||  ||| |||||||||||||    
T  27801315 tagtaattattcttttaaaaagtcaactattacaattttcaatgcattcattacacaactttttattaaaaacttactatttaaagtgcttaaaga 27801220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 1135178 - 1135273
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaaga 234  Q
    |||||||||||| |||||||| |||||||  ||||||||||||  |||||||| | | |||||| ||||||||||||| ||| ||||| |||||||    
T  1135178 tagtaattattcttttaaaaagtcaactattacaattttcaatgtattcaatatacaacttttccttaaaaacttaccatttaaagtgtttaaaga 1135273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 42636455 - 42636336
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    |||||||||||  |  ||||| |||||||  ||||||| |||| |||| |||||| | |||||||||||||||||||| ||| ||||||||||||| |||    
T  42636455 tagtaattattattcaaaaaagtcaactattacaatttacaatgcatttaatacacaacttttcattaaaaacttaccatttaaagtgcttaaagagtgc 42636356  T
Q  239 cccggagacactcgttaaca 258  Q
     ||||   ||||||||||||    
T  42636355 tccgggagcactcgttaaca 42636336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 257
Target Start/End: Complemental strand, 4384224 - 4384107
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    |||||||||||| |||||||| |||||||  ||||||| |||| ||||||||||| | | |||||||||||| ||| | ||| ||||||||||||| ||     
T  4384224 tagtaattattcttttaaaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaatttatcatttaaagtgcttaaagagtgt 4384126  T
Q  239 cccggagacactcgttaac 257  Q
    ||||   ||||||||||||    
T  4384125 cccgagaacactcgttaac 4384107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 3520894 - 3520822
Alignment:
Q  142 taattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaactta 214  Q
    ||||||||| |||||||| |||||||  ||| |||| ||| ||||||||||||| ||||||||||||||||||    
T  3520894 taattattcttttaaaaaatcaactattacagtttttaatgcattcaatacataacttttcattaaaaactta 3520822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 147 - 234
Target Start/End: Original strand, 28207649 - 28207737
Alignment:
Q  147 attcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaa-gtgcttaaaga 234  Q
    |||| |||||||| |||||||  ||||||| |||| ||||||||||| | ||||||||||||||||| || ||| || |||||||||||    
T  28207649 attcttttaaaaagtcaactattacaatttccaatgcattcaatacacaacttttcattaaaaactttccatttaaaggtgcttaaaga 28207737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 258
Target Start/End: Original strand, 33013066 - 33013180
Alignment:
Q  143 aattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgccccg 242  Q
    |||||||| |||||||| |||||||  ||||||| ||||  | |||||||| | |||||||| || |||||||   || ||||||||||||| ||||| |    
T  33013066 aattattcttttaaaaagtcaactattacaatttccaatgtactcaatacacaacttttcataaagaacttactaattaaagtgcttaaagagtgcccag 33013165  T
Q  243 gagacactcgttaaca 258  Q
    ||| ||||||||||||    
T  33013166 gag-cactcgttaaca 33013180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 16723282 - 16723234
Alignment:
Q  141 gtaattattcatttaaaaattcaactaccacaattttcaatacattcaa 189  Q
    |||||||||| |||||||| |||||||  ||||||||||||||||||||    
T  16723282 gtaattattcttttaaaaaatcaactaatacaattttcaatacattcaa 16723234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 35901951 - 35902023
Alignment:
Q  142 taattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaactta 214  Q
    ||||||||  |||||||| |||| ||  ||||||| |||| ||||||||||| | ||||||||||||||||||    
T  35901951 taattatttttttaaaaagtcaattattacaatttccaatgcattcaatacagaacttttcattaaaaactta 35902023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 37427239 - 37427326
Alignment:
Q  170 acaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgccccggagacactcgttaaca 258  Q
    ||||||||||||  | |||||||  | ||||||||||||| |||||| ||| ||||||||||||| ||  |||||| ||||||||||||    
T  37427239 acaattttcaatgtaatcaatactcaacttttcattaaaatcttaccatttaaagtgcttaaagagtg-tccggaggcactcgttaaca 37427326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 12954745 - 12954864
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    |||||||||||  ||| |||| |||||||  | ||||||||||| ||| |||||| |  |||||| |||||| ||| | ||| |||| | |||||| ||     
T  12954745 tagtaattattttttttaaaaatcaactattataattttcaatagatttaatacacaatttttcaataaaaatttatcatttaaagtacataaagagtgt 12954844  T
Q  239 cccggagacactcgttaaca 258  Q
    | ||||||||||||||||||    
T  12954845 ctcggagacactcgttaaca 12954864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 12829921 - 12829867
Alignment:
Q  178 caatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaa 232  Q
    |||| ||||||||| |||  ||||||||||||||||||| ||| |||||||||||    
T  12829921 caatgcattcaatatataatttttcattaaaaacttaccatttaaagtgcttaaa 12829867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 243
Target Start/End: Complemental strand, 2258149 - 2258076
Alignment:
Q  170 acaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgccccgg 243  Q
    |||||||| |||  ||| |||||| | ||||||||| |||||||||| ||| ||||||||||||| || |||||    
T  2258149 acaatttttaatgtatttaatacacaacttttcatttaaaacttaccatttaaagtgcttaaagattgtcccgg 2258076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 29083989 - 29083869
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgtttt-aagtgcttaaagaatg 237  Q
    |||||||||||| |||||||| | |||||  |||||||| ||| |||| |||||| | ||||||| |||||||||||  |||| ||||||||||||| |     
T  29083989 tagtaattattcttttaaaaagttaactattacaatttttaatgcatttaatacacaacttttcaataaaaacttactattttaaagtgcttaaagagta 29083890  T
Q  238 ccccggagacactcgttaaca 258  Q
     || |||| ||||||||||||    
T  29083889 tcctggaggcactcgttaaca 29083869  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 24791526 - 24791588
Alignment:
Q  152 tttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaactta 214  Q
    |||||||| |||||||  ||||||||||||  |||||||||||| ||||||||||||||||||    
T  24791526 tttaaaaagtcaactattacaattttcaatgtattcaatacataacttttcattaaaaactta 24791588  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 40673456 - 40673543
Alignment:
Q  144 attattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaa 231  Q
    ||||||| ||||||||||||||||  |||||||  |||| ||||||||||   |||||| ||||||||||| | ||| ||||||||||    
T  40673456 attattcttttaaaaattcaactattacaatttctaatatattcaatacactacttttctttaaaaacttatcatttaaagtgcttaa 40673543  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 42846095 - 42846019
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaata-cattcaatacatatcttttcattaaaaactta 214  Q
    |||||||||||| || ||||| |||||||   |||||||||||  ||||||||||| | ||||||||||||||||||    
T  42846095 tagtaattattctttgaaaaagtcaactatttcaattttcaattgcattcaatacacaacttttcattaaaaactta 42846019  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 51351327 - 51351389
Alignment:
Q  172 aattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaaga 234  Q
    ||||| ||||||||| |||||| |  ||||||||||||||||||  ||| |||||||||||||    
T  51351327 aatttccaatacatttaatacacaatttttcattaaaaacttactttttaaagtgcttaaaga 51351389  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 239
Target Start/End: Complemental strand, 26900109 - 26900012
Alignment:
Q  143 aattattcatttaaaaat-tcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgcc 239  Q
    |||||||| ||||||||  |||||||  |||||||||||| |||| | |||||| ||||||||  |||| ||||| ||| ||||| ||||||| ||||    
T  26900109 aattattcttttaaaaaagtcaactattacaattttcaatgcatttattacataacttttcatataaaatttaccatttaaagtgtttaaagagtgcc 26900012  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 11623573 - 11623605
Alignment:
Q  226 gcttaaagaatgccccggagacactcgttaaca 258  Q
    ||||||||| |||||||||||||||||||||||    
T  11623573 gcttaaagagtgccccggagacactcgttaaca 11623605  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 12086852 - 12086776
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttac 215  Q
    |||||||||||| ||| ||||  || |||  | |||||||| | ||||||||||| || ||||||||||||||||||    
T  12086852 tagtaattattctttttaaaagacatctattataattttcagtgcattcaatacacattttttcattaaaaacttac 12086776  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 39551940 - 39551869
Alignment:
Q  143 aattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttac 215  Q
    |||||||| |||||||| |||||||  ||||||||||||||| |||||| | | |||||||| || |||||||    
T  39551940 aattattcttttaaaaaatcaactat-acaattttcaatacactcaataaacaacttttcataaagaacttac 39551869  T

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Target: scaffold1444 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 939 - 887
Alignment:
Q  206 aaaaacttaccgttttaagtgcttaaagaatgccccggagacactcgttaaca 258  Q
    ||||||||||| |||| |||| ||||||| |||||||||||||||||||||||    
T  939 aaaaacttaccatttttagtgtttaaagagtgccccggagacactcgttaaca 887  T

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Target: scaffold0419 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 1082 - 1201
Alignment:
Q  139 tagtaattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttaccgttttaagtgcttaaagaatgc 238  Q
    |||||||||||| ||| |||| |||||||  | ||||| |||| ||||||||||| |  ||||||||||||||||    ||| || || |||||||||      
T  1082 tagtaattattcttttgaaaaatcaactattataatttccaatgcattcaatacaaaatttttcattaaaaacttgttatttaaaatgtttaaagaatat 1181  T
Q  239 cccggagacactcgttaaca 258  Q
    ||||||| ||||||||||||    
T  1182 cccggaggcactcgttaaca 1201  T

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Target: scaffold0119 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 1428 - 1501
Alignment:
Q  142 taattattcatttaaaaattcaactaccacaattttcaatacattcaatacatatcttttcattaaaaacttac 215  Q
    ||||||||| |||||||| |||||||  |||||||||| |  ||| |||||||| |||||||||||||| ||||    
T  1428 taattattcttttaaaaagtcaactattacaattttcactgtatttaatacataacttttcattaaaaatttac 1501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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