View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12521_low_23 (Length: 340)
Name: NF12521_low_23
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12521_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 328
Target Start/End: Original strand, 21047450 - 21047762
Alignment:
| Q |
16 |
gagaaaaagcctggagaaagaaaacggttgtgggatcctaaagaaatttatgatgtcttcaagcataacaaggtagggttcaaatttcttagtctgcacc |
115 |
Q |
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| T |
21047450 |
gagaaaaagcctggagaaagaaaacggttgtgggatcctaaagaaatttatgatgtcttcaagcataacaaggtagggttcaaatttcttagtctgcacc |
21047549 |
T |
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| Q |
116 |
acatttctaaatatgtccaaagcattagtaaattaatctgtcgagcatgtttaacactctaaatttgtttactccttttattttccagggtattgaaagt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21047550 |
acatttctaaatatgtccaaagcattagtaaattaatctgtcgagcatgtttaacactctaaatttgtttactccttttattttccagggtattgaaagt |
21047649 |
T |
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| Q |
216 |
attgagtgtgttgtgttggacatgtctcaaatcaaagagttgacattaagccctcaaacatttcagagaacgcacaggctcagagttttgatattttata |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21047650 |
attgagtgtgttgtgttggacatgtctcaaatcaaagagttgacattaagccctcaaacatttcagagaacgcacaggctcagagttttgatattttata |
21047749 |
T |
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| Q |
316 |
taccctccagtga |
328 |
Q |
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||||||||||||| |
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| T |
21047750 |
taccctccagtga |
21047762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 16 - 328
Target Start/End: Original strand, 21059779 - 21060091
Alignment:
| Q |
16 |
gagaaaaagcctggagaaagaaaacggttgtgggatcctaaagaaatttatgatgtcttcaagcataacaaggtagggttcaaatttcttagtctgcacc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21059779 |
gagaaaaagcctggagaaagaaaacggttgtgggatcctaaagaaatttatgatgtcttcaagcataacagggtagggttcaaatttcttagtctgcacc |
21059878 |
T |
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| Q |
116 |
acatttctaaatatgtccaaagcattagtaaattaatctgtcgagcatgtttaacactctaaatttgtttactccttttattttccagggtattgaaagt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21059879 |
acatttctaaatatgtccaaagcattagtaaattaatctgtcgagcatgtttaacactctaaatttgtttactccttttattttccagggttttgaaagt |
21059978 |
T |
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| Q |
216 |
attgagtgtgttgtgttggacatgtctcaaatcaaagagttgacattaagccctcaaacatttcagagaacgcacaggctcagagttttgatattttata |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21059979 |
attgagtgtgttgtgttggacatgtctcaaatcaaagagttgacattaagccctcaaacatttcagagaacgcacaggctcagagttttgatattttata |
21060078 |
T |
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| Q |
316 |
taccctccagtga |
328 |
Q |
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||||||||||||| |
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| T |
21060079 |
taccctccagtga |
21060091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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