View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12521_low_24 (Length: 339)
Name: NF12521_low_24
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12521_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 325
Target Start/End: Complemental strand, 14733459 - 14733153
Alignment:
| Q |
16 |
aattacataattgtcaaaacattgttgtcttgtcttactttcttttcatttcttagctaatcttgattagctatttgcttaataccaaattgtcaattat |
115 |
Q |
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| T |
14733459 |
aattacataattgtcaaaacattgttgtcttgtcttactttcttttcatttcttagctaatcttgattagttatttgcttaataccaaattgtcaattat |
14733360 |
T |
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| Q |
116 |
atataaaactcatttgaataatggcaatggagataagatattccctcaacgattggcctattttatcacacagattgaaaccaaatatgatcggtcctaa |
215 |
Q |
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| T |
14733359 |
atataaaactcatttgaataatggcaatggagatacgatattccctcaacgattggcctattttatcatacagattgaaaccaaatatgatcggtcctaa |
14733260 |
T |
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| Q |
216 |
aacattttatgtagatacaagacctgtttcaaagaataacaagagcatgaaacaagttaccattttcataataaccaagaaaaagttcaggcttaagaga |
315 |
Q |
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| T |
14733259 |
aacattttatgtagatacaagagctgtttcaaagaataacaagagcatgaaacaagttaccattttc---ataaccaagaaaaagttcaggcttaagaga |
14733163 |
T |
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| Q |
316 |
gggatcagtg |
325 |
Q |
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| T |
14733162 |
gggattagtg |
14733153 |
T |
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