View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12521_low_26 (Length: 337)

Name: NF12521_low_26
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12521_low_26
NF12521_low_26
[»] chr7 (9 HSPs)
chr7 (20-181)||(6774383-6774544)
chr7 (20-181)||(6778670-6778831)
chr7 (20-177)||(37476091-37476248)
chr7 (20-177)||(37480613-37480770)
chr7 (15-177)||(37466296-37466458)
chr7 (250-322)||(6774613-6774685)
chr7 (250-312)||(6778900-6778962)
chr7 (265-322)||(37475463-37475520)
chr7 (52-93)||(37580995-37581036)
[»] chr1 (1 HSPs)
chr1 (32-177)||(45071567-45071712)
[»] chr8 (2 HSPs)
chr8 (15-180)||(37362791-37362956)
chr8 (32-180)||(37365114-37365262)
[»] chr3 (1 HSPs)
chr3 (33-181)||(50915221-50915369)
[»] chr5 (2 HSPs)
chr5 (32-175)||(8992536-8992679)
chr5 (32-175)||(8983138-8983281)
[»] chr4 (5 HSPs)
chr4 (18-171)||(11160811-11160964)
chr4 (99-175)||(5646999-5647075)
chr4 (107-175)||(11174924-11174992)
chr4 (107-175)||(11182374-11182442)
chr4 (74-175)||(11179053-11179154)


Alignment Details
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 6774383 - 6774544
Alignment:
Q  20 atcaagagtctactggatcttacctgccagtatgtggcggacatgatcaaagggaagacaccggaggaaattcgagcgacttttaatattaagaatgatt 119  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||    
T  6774383 atcaagagtctattggatcttacctgccagtatgtggcggacatgatcaaagggaagacaccggaggaaattcgaaagacttttaatatcaagaatgatt 6774482  T
Q  120 tcactccggaggaagaggaagaagttcgtagggaaaatcaatgggcatttgaatgaatgaaa 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6774483 tcactccggaggaagaggaagaagttcgtagggaaaatcaatgggcagttgaatgaatgaaa 6774544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 6778670 - 6778831
Alignment:
Q  20 atcaagagtctactggatcttacctgccagtatgtggcggacatgatcaaagggaagacaccggaggaaattcgagcgacttttaatattaagaatgatt 119  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||    
T  6778670 atcaagagtctactggatcttacatgccagtctgtggcggacatgatcaaagggaagacaccggaggaaattcgaaagacttttaatatcaagaatgatt 6778769  T
Q  120 tcactccggaggaagaggaagaagttcgtagggaaaatcaatgggcatttgaatgaatgaaa 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6778770 tcactccggaggaagaggaagaagttcgtagggaaaatcaatgggcatttgaatgaatgaaa 6778831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 37476248 - 37476091
Alignment:
Q  20 atcaagagtctactggatcttacctgccagtatgtggcggacatgatcaaagggaagacaccggaggaaattcgagcgacttttaatattaagaatgatt 119  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||  |||||||||||| ||||||||||    
T  37476248 atcaagagtctactggatcttacctgccagactgtggcggacatgatcaaagggaagacaccagaggaaattcgaaagacttttaatatcaagaatgatt 37476149  T
Q  120 tcactccggaggaagaggaagaagttcgtagggaaaatcaatgggcatttgaatgaat 177  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37476148 tcactccggaggaagaggaagaagttcgcagggaaaatcaatgggcatttgaatgaat 37476091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 37480770 - 37480613
Alignment:
Q  20 atcaagagtctactggatcttacctgccagtatgtggcggacatgatcaaagggaagacaccggaggaaattcgagcgacttttaatattaagaatgatt 119  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||  |||||||||||| ||||||||||    
T  37480770 atcaagagtctactggatcttacctgccagactgtggcggacatgatcaaagggaagacgccggaggaaattcgaaagacttttaatatcaagaatgatt 37480671  T
Q  120 tcactccggaggaagaggaagaagttcgtagggaaaatcaatgggcatttgaatgaat 177  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37480670 tcacttcggaggaagaggaagaaattcgtagggaaaatcaatgggcatttgaatgaat 37480613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 177
Target Start/End: Complemental strand, 37466458 - 37466296
Alignment:
Q  15 tggacatcaagagtctactggatcttacctgccagtatgtggcggacatgatcaaagggaagacaccggaggaaattcgagcgacttttaatattaagaa 114  Q
    |||| ||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||| || |||||||| || | ||  ||||| || |||||    
T  37466458 tggatatcaagagtctactggatcttacctgccagtctgcggcggacatgatgaaagggaagacgcccgaggaaatgcgtgagatgtttaacatcaagaa 37466359  T
Q  115 tgatttcactccggaggaagaggaagaagttcgtagggaaaatcaatgggcatttgaatgaat 177  Q
    |||||||| ||| |||||||| | || | |||||   |||||  |||||||||||||||||||    
T  37466358 tgatttcagtccagaggaagaagcagcaattcgtgcagaaaacaaatgggcatttgaatgaat 37466296  T

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Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 250 - 322
Target Start/End: Original strand, 6774613 - 6774685
Alignment:
Q  250 catgctgcttggtattgaatggactatgttcacttgatagatgacattagtctaggatgtgttctcttctagt 322  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6774613 catgctgcttggtagtgaatggactatgttcacttgatagatgacactagtctaggatgtgttctcttctagt 6774685  T

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Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 250 - 312
Target Start/End: Original strand, 6778900 - 6778962
Alignment:
Q  250 catgctgcttggtattgaatggactatgttcacttgatagatgacattagtctaggatgtgtt 312  Q
    ||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6778900 catgctgcttgttagtgaatggactatgttcacttgatagatgacactagtctaggatgtgtt 6778962  T

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Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 265 - 322
Target Start/End: Complemental strand, 37475520 - 37475463
Alignment:
Q  265 tgaatggactatgttcacttgatagatgacattagtctaggatgtgttctcttctagt 322  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||    
T  37475520 tgaatggactatgttcacttaatagatgacactagtctaggatgtgttctcttttagt 37475463  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 37580995 - 37581036
Alignment:
Q  52 tgtggcggacatgatcaaagggaagacaccggaggaaattcg 93  Q
    |||||||||||||||||| |||||||| |||||||| |||||    
T  37580995 tgtggcggacatgatcaaggggaagacgccggaggagattcg 37581036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 32 - 177
Target Start/End: Complemental strand, 45071712 - 45071567
Alignment:
Q  32 ctggatcttacctgccagtatgtggcggacatgatcaaagggaagacaccggaggaaattcgagcgacttttaatattaagaatgatttcactccggagg 131  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||  ||||||||| || |||||||||||||||||| |||    
T  45071712 ctggatcttacctgccagattgtggcggacatgatcaaagggaagacaccggaggaaattcgaaagacttttaacatcaagaatgatttcactccgaagg 45071613  T
Q  132 aagaggaagaagttcgtagggaaaatcaatgggcatttgaatgaat 177  Q
    |||| |||||||||||  ||||||||||||||||||||||||||||    
T  45071612 aagaagaagaagttcgctgggaaaatcaatgggcatttgaatgaat 45071567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 37362956 - 37362791
Alignment:
Q  15 tggacatcaagagtctactggatcttacctgccagtatgtggcggacatgatcaaagggaagacaccggaggaaattcgagcgacttttaatattaagaa 114  Q
    |||| ||||||||  | ||||||||||||||| ||  ||||| | ||||||| |||||||||||||||||| ||||||||| ||||||| | || |||||    
T  37362956 tggatatcaagagcttgctggatcttacctgcgagactgtggtgaacatgattaaagggaagacaccggagcaaattcgagagacttttcacatcaagaa 37362857  T
Q  115 tgatttcactccggaggaagaggaagaagttcgtagggaaaatcaatgggcatttgaatgaatgaa 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37362856 tgatttcactccggaggaagaggaagaagttcgtagggaaaatcaatgggtatttgaatgaatgaa 37362791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 32 - 180
Target Start/End: Original strand, 37365114 - 37365262
Alignment:
Q  32 ctggatcttacctgccagtatgtggcggacatgatcaaagggaagacaccggaggaaattcgagcgacttttaatattaagaatgatttcactccggagg 131  Q
    ||||||||||||||| ||  ||||||| ||||||| |||||||||||||||||| ||||||||| ||||||| | || ||||||||||||||||||||||    
T  37365114 ctggatcttacctgcgagactgtggcgaacatgattaaagggaagacaccggagcaaattcgagagacttttcacatcaagaatgatttcactccggagg 37365213  T
Q  132 aagaggaagaagttcgtagggaaaatcaatgggcatttgaatgaatgaa 180  Q
    || |||||||||||||||||||||| |||||||||||||||||||||||    
T  37365214 aaaaggaagaagttcgtagggaaaaccaatgggcatttgaatgaatgaa 37365262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 33 - 181
Target Start/End: Original strand, 50915221 - 50915369
Alignment:
Q  33 tggatcttacctgccagtatgtggcggacatgatcaaagggaagacaccggaggaaattcgagcgacttttaatattaagaatgatttcactccggagga 132  Q
    |||||||||| |||||   ||||||||||||||| |||||||||||||||||||||||||||   |||||||| ||  |||| |||||||||||| ||||    
T  50915221 tggatcttacttgccaaactgtggcggacatgatgaaagggaagacaccggaggaaattcgaaacacttttaacatcgagaacgatttcactccgcagga 50915320  T
Q  133 agaggaagaagttcgtagggaaaatcaatgggcatttgaatgaatgaaa 181  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  50915321 agaggaagaagttcgaagggaaaatcaatgggcatttgaatgaatgaaa 50915369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 32 - 175
Target Start/End: Original strand, 8992536 - 8992679
Alignment:
Q  32 ctggatcttacctgccagtatgtggcggacatgatcaaagggaagacaccggaggaaattcgagcgacttttaatattaagaatgatttcactccggagg 131  Q
    ||||||||||| ||||||  |||||| ||||||||||| ||||||||||| ||||| |||||   ||| ||||| ||||||||||||||| | || ||||    
T  8992536 ctggatcttacatgccagactgtggcagacatgatcaaggggaagacacctgaggagattcgcaagacctttaacattaagaatgatttctcaccagagg 8992635  T
Q  132 aagaggaagaagttcgtagggaaaatcaatgggcatttgaatga 175  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||    
T  8992636 aagaggaggaagttcgtagggaaaaccaatgggcatttgaatga 8992679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 175
Target Start/End: Original strand, 8983138 - 8983281
Alignment:
Q  32 ctggatcttacctgccagtatgtggcggacatgatcaaagggaagacaccggaggaaattcgagcgacttttaatattaagaatgatttcactccggagg 131  Q
    |||||||||||||||||   ||| || ||||||||||| || || ||||| ||||| || ||   ||| || || || |||||||| ||| | || ||||    
T  8983138 ctggatcttacctgccaaactgttgcagacatgatcaagggaaaaacaccagaggagatccgcaagacattcaacatcaagaatgacttctcacctgagg 8983237  T
Q  132 aagaggaagaagttcgtagggaaaatcaatgggcatttgaatga 175  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||    
T  8983238 aagaggaggaagttcgtagggaaaaccaatgggcatttgaatga 8983281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 11160811 - 11160964
Alignment:
Q  18 acatcaagagtctactggatcttacctgccagtatgtggcggacatgatcaaagggaagacaccggaggaaattcgagcgacttttaatattaagaatga 117  Q
    ||||||| ||||| ||||||||||| ||| ||  ||| || ||||||||||| || | ||| |||||||| |||||   |||||| || ||||  |||||    
T  11160811 acatcaaaagtctgctggatcttacatgcaagactgtagcagacatgatcaagggtaggacgccggaggagattcgtaagactttcaacattattaatga 11160910  T
Q  118 tttcactccggaggaagaggaagaagttcgtagggaaaatcaatgggcatttga 171  Q
    || |||||||||||||||||| ||||| ||||| |||| ||||||||| |||||    
T  11160911 ttacactccggaggaagaggaggaagtccgtagcgaaactcaatgggcttttga 11160964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 5646999 - 5647075
Alignment:
Q  99 cttttaatattaagaatgatttcactccggaggaagaggaagaagttcgtagggaaaatcaatgggcatttgaatga 175  Q
    ||||||| |||  |||||||||| |||||||||||||||| ||  |||||| ||||||||||||||| || ||||||    
T  5646999 cttttaagattgcgaatgatttctctccggaggaagaggaggagattcgtaaggaaaatcaatgggctttagaatga 5647075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 11174924 - 11174992
Alignment:
Q  107 attaagaatgatttcactccggaggaagaggaagaagttcgtagggaaaatcaatgggcatttgaatga 175  Q
    ||||||||||||| || ||| ||||||||| |  || ||||||| |||||||||||||| |||||||||    
T  11174924 attaagaatgattacagtcctgaggaagagcagaaaattcgtagcgaaaatcaatgggcttttgaatga 11174992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 11182374 - 11182442
Alignment:
Q  107 attaagaatgatttcactccggaggaagaggaagaagttcgtagggaaaatcaatgggcatttgaatga 175  Q
    ||||||||||||| || ||| ||||||||| |  || ||||||| |||||||||||||| |||||||||    
T  11182374 attaagaatgattacagtcccgaggaagagcagaaaattcgtagcgaaaatcaatgggcttttgaatga 11182442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 175
Target Start/End: Complemental strand, 11179154 - 11179053
Alignment:
Q  74 aagacaccggaggaaattcgagcgacttttaatattaagaatgatttcactccggaggaagaggaagaagttcgtagggaaaatcaatgggcatttgaat 173  Q
    |||||||| ||||| |||||   || ||| || ||||||||||||| ||| || ||||||||||| ||||||||| | ||||||   ||||| |||||||    
T  11179154 aagacaccagaggagattcgcaagattttcaacattaagaatgattacaccccagaggaagaggaggaagttcgtcgcgaaaatagttgggcttttgaat 11179055  T
Q  174 ga 175  Q
    ||    
T  11179054 ga 11179053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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