View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12521_low_28 (Length: 333)

Name: NF12521_low_28
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12521_low_28
NF12521_low_28
[»] chr7 (1 HSPs)
chr7 (6-322)||(48427301-48427617)
[»] chr2 (2 HSPs)
chr2 (6-322)||(29494633-29494949)
chr2 (11-322)||(30158528-30158836)
[»] chr1 (3 HSPs)
chr1 (6-322)||(6856313-6856629)
chr1 (161-322)||(6862677-6862838)
chr1 (15-94)||(34455640-34455719)
[»] chr3 (2 HSPs)
chr3 (6-322)||(11011641-11011957)
chr3 (161-299)||(44138513-44138648)
[»] chr4 (2 HSPs)
chr4 (174-313)||(56516639-56516777)
chr4 (20-95)||(56516824-56516899)
[»] chr5 (1 HSPs)
chr5 (222-319)||(18254870-18254966)


Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 6 - 322
Target Start/End: Complemental strand, 48427617 - 48427301
Alignment:
Q  6 agaagcagagatagacttacctttccttttcttaggaggttgatcattccccagttcagattcatgacaatgttgagatgtggactcatccctttctttg 105  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  48427617 agaaacagagatagacttacctttccttttcttaggaggttgatcattccccggttcagattcatgacagtgttgagatgtggactcatccctttctttg 48427518  T
Q  106 tggtgctttttcacaaaaaacttccctttccaaatcccgtttcctagttcaaatatgttctctttaagtgactcattattttgtggcatttcaattagat 205  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  48427517 tggtgctttttcacaaaaaccttccctttccaaatcccgtttcctagttcaaatttgttctctttaagtgactcattattttgtggcatttcaattagat 48427418  T
Q  206 catcattatcaagtgcttcaagattctcattgtttcctacgtgagaaaatgtaggctcggactcaccaagttccttactcataacaggagtaggatcaga 305  Q
    |||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  48427417 catcatcatcaagtgcttcaagattctcattgttttctacatgagaaaatgtaggctcggattcaccaagttccttacttataacaggagtaggatcaga 48427318  T
Q  306 taaagaatgatgtccat 322  Q
    |||||||| ||||||||    
T  48427317 taaagaatcatgtccat 48427301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 29494633 - 29494949
Alignment:
Q  6 agaagcagagatagacttacctttccttttcttaggaggttgatcattccccagttcagattcatgacaatgttgagatgtggactcatccctttctttg 105  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  29494633 agaaacagagatagacttgcctttccttttcttaggaggttgatcattccccggttcagattcatgacagtgttgagatgtggactcatccctttctttg 29494732  T
Q  106 tggtgctttttcacaaaaaacttccctttccaaatcccgtttcctagttcaaatatgttctctttaagtgactcattattttgtggcatttcaattagat 205  Q
    |||||||||||||||| || |||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29494733 tggtgctttttcacaagaaccttctctttccaaatcctgtttcctagttcaaatttgttctctttaagtgactcattattttgtggcatttcaattagat 29494832  T
Q  206 catcattatcaagtgcttcaagattctcattgtttcctacgtgagaaaatgtaggctcggactcaccaagttccttactcataacaggagtaggatcaga 305  Q
    |||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  29494833 catcataatcaagtgcttcaagattctcattgttttctacatgagaaaatgtaggctcggattcaccaagttccttactcataacaagagtaggatcaga 29494932  T
Q  306 taaagaatgatgtccat 322  Q
    |||||||| ||||||||    
T  29494933 taaagaatcatgtccat 29494949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 11 - 322
Target Start/End: Complemental strand, 30158836 - 30158528
Alignment:
Q  11 cagagatagacttacctttccttttcttaggaggttgatcattccccagttcagattcatgacaatgttgagatgtggactcatccctttctttgtggtg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  30158836 cagagatagacttacctttccttttcttaggaggttgatcattacctggttcagattcatggcagtgttgagatgtggactcatccctttctttgtggtg 30158737  T
Q  111 ctttttcacaaaaaacttccctttccaaatcccgtttcctagttcaaatatgttctctttaagtgactcattattttgtggcatttcaattagatcatca 210  Q
    ||| |||||||||| |||||||||| |||||  ||||||||||||||||    | ||||||||||||||||||| |||||||||||| ||||||||||||    
T  30158736 cttcttcacaaaaaccttccctttcaaaatcttgtttcctagttcaaat---ctatctttaagtgactcattatcttgtggcatttcgattagatcatca 30158640  T
Q  211 ttatcaagtgcttcaagattctcattgtttcctacgtgagaaaatgtaggctcggactcaccaagttccttactcataacaggagtaggatcagataaag 310  Q
     |||||     ||||||||||||||||||| | || ||||||||||||||||  || ||||||| |||| ||| ||||||||||||||||||||||||||    
T  30158639 ctatcatcattttcaagattctcattgttttccacatgagaaaatgtaggctgagattcaccaacttccgtacccataacaggagtaggatcagataaag 30158540  T
Q  311 aatgatgtccat 322  Q
    ||| ||| ||||    
T  30158539 aatcatggccat 30158528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 6856313 - 6856629
Alignment:
Q  6 agaagcagagatagacttacctttccttttcttaggaggttgatcattccccagttcagattcatgacaatgttgagatgtggactcatccctttctttg 105  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||    
T  6856313 agaaacagagatagatttacctttccttttcttaggaggttgatcattccccggttcaaattcatgacagtgttgagatgtggactcatccctttctttg 6856412  T
Q  106 tggtgctttttcacaaaaaacttccctttccaaatcccgtttcctagttcaaatatgttctctttaagtgactcattattttgtggcatttcaattagat 205  Q
    ||||||||||||||||||  ||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  6856413 tggtgctttttcacaaaatccttccctttccaaattccgtttcctagttcaaatctgttctctgtaagtgactcattattttgtggcatttcaattagat 6856512  T
Q  206 catcattatcaagtgcttcaagattctcattgtttcctacgtgagaaaatgtaggctcggactcaccaagttccttactcataacaggagtaggatcaga 305  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  6856513 catcattatcaagtgcttcaagattctcattgttttctacatgagaaaatgtaggctcggattcaccaagttccttactcataacaggagtaggatcaaa 6856612  T
Q  306 taaagaatgatgtccat 322  Q
    |||||||| ||||||||    
T  6856613 taaagaatcatgtccat 6856629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 161 - 322
Target Start/End: Original strand, 6862677 - 6862838
Alignment:
Q  161 tgttctctttaagtgactcattattttgtggcatttcaattagatcatcattatcaagtgcttcaagattctcattgtttcctacgtgagaaaatgtagg 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  6862677 tgttctctttaagtgactcattattttgtggcatttcaattagatcatcattatcaagtgcttcaagattctcattgttttctacatgagaaaatgtagg 6862776  T
Q  261 ctcggactcaccaagttccttactcataacaggagtaggatcagataaagaatgatgtccat 322  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  6862777 ctcggattcaccaagttccttactcataacatgagtaggatcagataaagaatcatgtccat 6862838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 34455719 - 34455640
Alignment:
Q  15 gatagacttacctttccttttcttaggaggttgatcattccccagttcagattcatgacaatgttgagatgtggactcat 94  Q
    ||||||||||| |||||||| |||| ||| ||||| |||| |  ||||||||||||| ||||||||| ||||||| ||||    
T  34455719 gatagacttacatttcctttccttaagagtttgattattctctggttcagattcatggcaatgttgaaatgtggattcat 34455640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 6 - 322
Target Start/End: Complemental strand, 11011957 - 11011641
Alignment:
Q  6 agaagcagagatagacttacctttccttttcttaggaggttgatcattccccagttcagattcatgacaatgttgagatgtggactcatccctttctttg 105  Q
    |||| |||||| | |||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11011957 agaaacagagacaaacttacctttccttttcttaggaggttgattatttcccagttcagattcatgacagtgttgagatgtggactcatccctttctttg 11011858  T
Q  106 tggtgctttttcacaaaaaacttccctttccaaatcccgtttcctagttcaaatatgttctctttaagtgactcattattttgtggcatttcaattagat 205  Q
    |||||||| |||||||||| ||||||||||||||||| | |||||||||||| | | || |||| |||||||||||||||||||||||||| || |||||    
T  11011857 tggtgcttcttcacaaaaaccttccctttccaaatcctgcttcctagttcaagtctattatcttcaagtgactcattattttgtggcattttaactagat 11011758  T
Q  206 catcattatcaagtgcttcaagattctcattgtttcctacgtgagaaaatgtaggctcggactcaccaagttccttactcataacaggagtaggatcaga 305  Q
    ||||| ||| |     ||||||||||||||||||| |  | |||||| ||||||||||||| ||||||||| ||||||||||| ||||||||||| ||||    
T  11011757 catcactatgatcgttttcaagattctcattgttttcctcatgagaagatgtaggctcggattcaccaagtgccttactcatagcaggagtaggagcaga 11011658  T
Q  306 taaagaatgatgtccat 322  Q
    || ||||| ||| ||||    
T  11011657 tatagaatcatggccat 11011641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 299
Target Start/End: Complemental strand, 44138648 - 44138513
Alignment:
Q  161 tgttctctttaagtgactcattattttgtggcatttcaattagatcatcattatcaagtgcttcaagattctcattgtttcctacgtgagaaaatgtagg 260  Q
    |||||||||||  |||||||| |||||||||||||| |||||| |||| ||  | || |  ||||||||||||| |||||  | | |  |||||||||||    
T  44138648 tgttctctttagatgactcatcattttgtggcattttaattagttcattatctt-aatt--ttcaagattctcaatgttttgttcatacgaaaatgtagg 44138552  T
Q  261 ctcggactcaccaagttccttactcataacaggagtagg 299  Q
    || ||| ||| ||||||||||||||||| ||||||||||    
T  44138551 cttggattcatcaagttccttactcatagcaggagtagg 44138513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 174 - 313
Target Start/End: Complemental strand, 56516777 - 56516639
Alignment:
Q  174 tgactcattattttgtggcatttcaattagatcatcattatcaagtgcttcaagattctcattgtttcctacgtgagaaaatgtaggctcggactcacca 273  Q
    |||||||| ||||||||||||||||||||| |||||||||  |     ||||||||||||||||||| || ||||||||||||||| | | || ||||||    
T  56516777 tgactcatcattttgtggcatttcaattagttcatcattactatcattttcaagattctcattgttttcttcgtgagaaaatgtagacacagattcacca 56516678  T
Q  274 agttccttactcataacaggagtaggatcagataaagaat 313  Q
    |||| |||||||||| ||| |||||| |||| ||| ||||    
T  56516677 agtt-cttactcatagcagaagtaggttcaggtaatgaat 56516639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 56516899 - 56516824
Alignment:
Q  20 acttacctttccttttcttaggaggttgatcattccccagttcagattcatgacaatgttgagatgtggactcatc 95  Q
    |||||||||||||||| | |||||||||||| | | || |||||||||| || |||||| ||||||| ||||||||    
T  56516899 acttacctttccttttttgaggaggttgatcctacaccggttcagattcgtggcaatgtggagatgtagactcatc 56516824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 222 - 319
Target Start/End: Complemental strand, 18254966 - 18254870
Alignment:
Q  222 ttcaagattctcattgtttcctacgtgagaaaatgtaggctcggactcaccaagttccttactcataacaggagtaggatcagataaagaatgatgtc 319  Q
    ||||||||| ||||||||| || | ||||||||||||||| | || |||||| ||||||||||||||||| ||||||| |||| ||| |||| |||||    
T  18254966 ttcaagattttcattgtttacttcatgagaaaatgtaggcaccga-tcaccatgttccttactcataacaagagtaggttcaggtaatgaatcatgtc 18254870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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