View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12521_low_29 (Length: 330)
Name: NF12521_low_29
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12521_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 140 - 319
Target Start/End: Original strand, 36381012 - 36381194
Alignment:
| Q |
140 |
cttgaattagatatttgttctactaaattaatttaataaacaaattttaatatttcacnnnnnnnnn---ctttcagatttgtttatgcaaagctctggt |
236 |
Q |
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| T |
36381012 |
cttgagttagatatttgttctactaaattaatttaataaacaaattttaatatttcaaacttttttttttctttcagatttgtttatgcaaagctatggt |
36381111 |
T |
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| Q |
237 |
ttggattttggaataaactatggacaaatagcaaacaatttaccatctcattcacgtgtagcagttcttataaaatcagtgaa |
319 |
Q |
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| T |
36381112 |
ttggattttggaataaactatggacaaatagcaaacaatttaccatctcattcacgtgtagcagttcttataaaatcattgaa |
36381194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 36380890 - 36380937
Alignment:
| Q |
20 |
acagtaaggccattctgccgcttacaatacccagaaaataaaaactgc |
67 |
Q |
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| T |
36380890 |
acagtaaggccattctgccgcttacaatacccagaaaataaaaactgc |
36380937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 19219480 - 19219528
Alignment:
| Q |
242 |
ttttggaataaactatggacaaatagcaaacaatttaccatctcattca |
290 |
Q |
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| T |
19219480 |
ttttggaataaactatggacaaatagcaagaaatctaccttctcattca |
19219528 |
T |
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