View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12521_low_3 (Length: 483)
Name: NF12521_low_3
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12521_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 103 - 469
Target Start/End: Complemental strand, 38820966 - 38820600
Alignment:
| Q |
103 |
aatgaaagattaatgatcaaatacattacattacacaaccaaagtatacgagcctaatttgtcttaatttatatactattattcttgcagctgccctgta |
202 |
Q |
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| T |
38820966 |
aatgaaagattaatgatcaaatacattacattacacaaccaaagtatacgagcctaatttgtcttaatttatatactattattcttgcagctgccctgta |
38820867 |
T |
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| Q |
203 |
tcatctggcttaaactcaagaaacccaagaaatttggcttgtcttggacaattaattgggtaggttaattacgagcatttaccaaactcaattagcacat |
302 |
Q |
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| T |
38820866 |
tcatctggcttaaactcaagaaacccaagaaatttggcttgtcttggacaattaattgggtaggttaattacgagcatttaccaaactcaattagcacat |
38820767 |
T |
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| Q |
303 |
taatgagactaattgattttgttcttttttcattttctattctatttcagatatgcattgttattggtgtcatgataatgacactatccccaattggtgc |
402 |
Q |
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| T |
38820766 |
taatgagactaattgattttgttcttttttcattttctattctatttcagatatgcattgttattggtgtcatgataatgacactatccccaattggtgc |
38820667 |
T |
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| Q |
403 |
tatgaggaatatcatcgttcaagccaagagctacaagtttttctcataaattatggaaacaaacatt |
469 |
Q |
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| T |
38820666 |
tatgaggaatatcatcgttcaagccaagagctacaagttcttctcataaattatggaaacaaacatt |
38820600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 38821029 - 38820964
Alignment:
| Q |
20 |
ggtttgccttagccccaacaagttacttcgtaagcaaaccannnnnnncatactatcttattcaat |
85 |
Q |
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| T |
38821029 |
ggtttgccttagccccaacaagttacttcgtaagcaaaccatttttttcatactatcttattcaat |
38820964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 34410580 - 34410645
Alignment:
| Q |
199 |
tgtatcatctggcttaaactcaagaaacccaagaaatttggcttgtcttggacaattaattgggta |
264 |
Q |
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| T |
34410580 |
tgtatcatatggcttaaactttacaaacctaagagatttggcttgtcttggataataaattgggta |
34410645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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