View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12521_low_31 (Length: 318)
Name: NF12521_low_31
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12521_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 39 - 302
Target Start/End: Original strand, 6047151 - 6047414
Alignment:
| Q |
39 |
cgactctgattatgatgatgacttttgccaaatttgaaacatttctgcacataaagatgtttgtgaacatcttagtcaccactcctcgatatttctctgc |
138 |
Q |
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| T |
6047151 |
cgactatgattatgatgatgacttttgacaaatttgaaacatttcagcacataaagatgtttgtgaacatcttagtcaccactcctcgttatttctctgc |
6047250 |
T |
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| Q |
139 |
aacattgggatcaaaagaaagttagctggtaataatttgttacctttgtgaaacccattcacattttgcaacttgtgtttacctaataaatgtaagaagc |
238 |
Q |
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| T |
6047251 |
aacattgggatcaaaagaaagttagctggtaataatttgttatctttgggaaacacattcacattttgcaacttgtgtttacctaataaatgcaagaagc |
6047350 |
T |
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| Q |
239 |
agtttttcaatttctttggcttttatgtttgaaaatttgtggattatagtctgattctacttct |
302 |
Q |
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| T |
6047351 |
agtttttcaatttctttggcttttatgtttgaaaatttgtggattatagtctgattctacttct |
6047414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 100 - 295
Target Start/End: Original strand, 6043905 - 6044099
Alignment:
| Q |
100 |
tgtgaacatcttagtcaccactcctcgatatttctctgcaacattgggatcaaaagaaagttagctggtaataatttgttacctttgtgaaacccattca |
199 |
Q |
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| T |
6043905 |
tgtgaacatcttagtctcaactcctcgttatttctctgcaacattgggatcaaaagaaagatagctggtaataatttgttatctttgtgaaacacattca |
6044004 |
T |
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| Q |
200 |
cattttgcaacttgtgtttacctaataaatgtaagaagcagtttttcaatttctttggcttttatgtttgaaaatttgtggattatagtctgattc |
295 |
Q |
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| T |
6044005 |
cagtttgcaacttgtgtttacctaataaatgtaagaagcaatttggcaatttctttggc-tttatgtttgaaaatcttaggattatagcctgattc |
6044099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 46072613 - 46072646
Alignment:
| Q |
1 |
cctcctgtgttcttttctgccgtagccttcttct |
34 |
Q |
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| T |
46072613 |
cctcctgtgttcttttctgccgtggccttcttct |
46072646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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