View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12521_low_32 (Length: 311)

Name: NF12521_low_32
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12521_low_32
NF12521_low_32
[»] chr6 (1 HSPs)
chr6 (1-296)||(1787062-1787361)


Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 1787062 - 1787361
Alignment:
Q  1 ttataactttttcaaatatgtatttgtgattaaatggtgtatgtatcaaaatgtttgtgaccacataagacttgtatatgtgactaaatggtgtatctaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1787062 ttataactttttcaaatatgtatttgtgattaaatggtgtatgtatcaaaatgtttgtgaccacataagacttgtatatgtgactaaatgatgtatctaa 1787161  T
Q  101 atgtttgtgaccacacaagactagggttcctgcaattagga-gaacccacattcacatagtctgatatcggaaatcgtctaatcttaattgaatggtcat 199  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||| ||||| |||||||||||||    
T  1787162 atgtttgtgaccatacaagactagggttcctgcaattaggaggaacccacattcacgtagtctgatattgggaatcgtctgatcttgattgaatggtcat 1787261  T
Q  200 cttgatcg---aatcaagattatcctgaatgcgtgactgcgtacttttgttgagcgtagtaaatctagtttgtatagatacaaagaaaatagactgatgt 296  Q
    ||||||||   |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||    
T  1787262 cttgatcgaacaatcaagattatcctgaatgcgtgactgcgtacttttgttgaccgtaataaatctagtttgtatagatacaaagaaaatagagtgatgt 1787361  T

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