View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12521_low_33 (Length: 308)
Name: NF12521_low_33
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12521_low_33 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 292
Target Start/End: Original strand, 43001099 - 43001380
Alignment:
| Q |
11 |
tggacatcagaagagaaagagttattcttgaagaaatttgctgcatttggaaaagatttccggaaaattgcttctttccttgatcacaagacaactgcag |
110 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43001099 |
tggacatcagaagagaaagaactattcttggagaaatttgctgcatttggaaaagatttccggaaaattgcttctttccttgatcacaagacaactgcag |
43001198 |
T |
|
| Q |
111 |
actgcgttgagttctactacaagaatcacaaatctgaatgttttgagaaactgaagaggaaagatgttggtaagctagggaagtcatatgcagctaaaac |
210 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43001199 |
actgcattgagttctactacaagaatcacaaatccgaatgttttgagaaactgaagaggaaagatattggtaagctagggaagtcatatgcagctaaaac |
43001298 |
T |
|
| Q |
211 |
taactcgatgacatcaggtaaaaaatggaaccatgaagttaatgtttcttcacttgatattttgagtgctgcttcagtgatg |
292 |
Q |
| |
|
||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43001299 |
taacttgatggcatcaggtaaaaaatggaatcatgaagttaatgtttcttcacttgatattttgagtgctgcttcagtgatg |
43001380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 10696099 - 10696264
Alignment:
| Q |
11 |
tggacatcagaagagaaagagttattcttgaagaaatttgctgcatttggaaaagatttccggaaaattgcttctttccttgatcacaagacaactgcag |
110 |
Q |
| |
|
||||| ||||||||||||||| | |||||| ||||||||||||| |||||||||||||| | |||||| || |||||||||| ||||||||||| || | |
|
|
| T |
10696099 |
tggacttcagaagagaaagaggttttcttggagaaatttgctgcctttggaaaagattttcaaaaaatttctactttccttgaccacaagacaacagcgg |
10696198 |
T |
|
| Q |
111 |
actgcgttgagttctactacaagaatcacaaatctgaatgttttgagaaactgaagaggaaagatg |
176 |
Q |
| |
|
|||| || || ||||||||||| |||||||| ||||| |||||||||||| | |||| |||||||| |
|
|
| T |
10696199 |
actgtgtggaattctactacaaaaatcacaagtctgattgttttgagaaaatcaagaagaaagatg |
10696264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 35 - 160
Target Start/End: Complemental strand, 10695493 - 10695368
Alignment:
| Q |
35 |
ttcttgaagaaatttgctgcatttggaaaagatttccggaaaattgcttctttccttgatcacaagacaactgcagactgcgttgagttctactacaaga |
134 |
Q |
| |
|
|||||| |||||||||| || |||||||||||||| || |||||| || |||||||||| ||||||||||| |||||||| ||||| ||||| ||||| | |
|
|
| T |
10695493 |
ttcttggagaaatttgcggcctttggaaaagattttcgaaaaatttctactttccttgaccacaagacaacagcagactgtgttgaattctaatacaaaa |
10695394 |
T |
|
| Q |
135 |
atcacaaatctgaatgttttgagaaa |
160 |
Q |
| |
|
|||| || ||||| |||||||||||| |
|
|
| T |
10695393 |
atcataagtctgattgttttgagaaa |
10695368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University