View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12521_low_36 (Length: 303)

Name: NF12521_low_36
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12521_low_36
NF12521_low_36
[»] chr4 (1 HSPs)
chr4 (1-284)||(39394848-39395142)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 39395142 - 39394848
Alignment:
Q  1 tcaagagatatgattgtattcacttagtgtcgacgc----------gggcatccaaattgcgaacacatttaa-aagagtttccttgtctatatgttttg 89  Q
    ||||||||||||||||||||||||||||||||||||          |||||||||||||| ||||||||||   ||||||||||||||||||||||||||    
T  39395142 tcaagagatatgattgtattcacttagtgtcgacgcaaatgagcttgggcatccaaattgtgaacacattttttaagagtttccttgtctatatgttttg 39395043  T
Q  90 gagcaacattcagatataaagatccattgtaggaaatatgaagtatattctcatgcaatgtctttagagaccaaaccatatacaatatgtagtacaaata 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39395042 gagcaacattcagatataaagatccattgtaggaaatatgaagtatattctcatgcaatgtctttagagaccaaaccatatacaatatgtagtacaaata 39394943  T
Q  190 tatgtggacgtgaagttgaagtggagcatagcactgatatcattttcggttatgaaatgtattccatgattcagaatatgccacaggacccaggc 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39394942 tatgtggacgtgaagttgaagtggagcatagcactgatatcattttcggttatgaaatgtattccatgattcagaatatgccacaggacccaggc 39394848  T

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