View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12521_low_38 (Length: 288)
Name: NF12521_low_38
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12521_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 273
Target Start/End: Original strand, 4507676 - 4507938
Alignment:
| Q |
11 |
cataggtaatgatgcttgaagtacaataaaaacacgagattttagccgcaacaacttcaacagttcatcaagaacaaacccttttggatctgataaagaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4507676 |
cataggtaatgatgcttgaagtacaataaaaacacgagattttagccgcaacaacttcaacagttcatcaagaacaaacccttttggatctgataaagaa |
4507775 |
T |
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| Q |
111 |
gtgaatggtggaagaactaatcgatactcaatcttcgagttaaccttttcgagagcctccgataagaggtttaacattccaaaatcactactataaggat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4507776 |
gtgaatggtggaagaactaatcgatactcaatcttcgagttaaccttttcgagagcctccgataagaggtttaacattccaaaatcactactataaggat |
4507875 |
T |
|
| Q |
211 |
tgtcttcatatatagctataactttttgagagttgaaactatggacaatatcagctatgaagt |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
4507876 |
tgtcttcatatatagctataactttttgagagttgaaaccatggacaatatcagctaagaagt |
4507938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 11 - 273
Target Start/End: Original strand, 4500435 - 4500697
Alignment:
| Q |
11 |
cataggtaatgatgcttgaagtacaataaaaacacgagattttagccgcaacaacttcaacagttcatcaagaacaaacccttttggatctgataaagaa |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
4500435 |
cataggtaatgatgcttgaagtacaataaaaacacgagattttagcctcaacaacttcaacaattcatcaagaacaaacccttttggatcagataaagaa |
4500534 |
T |
|
| Q |
111 |
gtgaatggtggaagaactaatcgatactcaatcttcgagttaaccttttcgagagcctccgataagaggtttaacattccaaaatcactactataaggat |
210 |
Q |
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||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||| |||||||||||||||||||| | ||||| | |
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| T |
4500535 |
gtgaatggtggaagaactaattgatactcaatctgggagttaaccttttggagagcctcggataagaggcttaacattccaaaatcactattgtaagggt |
4500634 |
T |
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| Q |
211 |
tgtcttcatatatagctataactttttgagagttgaaactatggacaatatcagctatgaagt |
273 |
Q |
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| |||||||||||||||||||| ||||||||||||||| ||||| ||| ||| |||||||| |
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| T |
4500635 |
tctcttcatatatagctataaccttttgagagttgaaagcatggattataccagatatgaagt |
4500697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 11 - 271
Target Start/End: Original strand, 4494867 - 4495127
Alignment:
| Q |
11 |
cataggtaatgatgcttgaagtacaataaaaacacgagattttagccgcaacaacttcaacagttcatcaagaacaaacccttttggatctgataaagaa |
110 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| || |||||| |
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| T |
4494867 |
catagctaacgatgcttgaagtacaataaaaacacgagattttagcggcaacaacttcaacaattcatcaagaacaaacccttttggatcagacaaagaa |
4494966 |
T |
|
| Q |
111 |
gtgaatggtggaagaactaatcgatactcaatcttcgagttaaccttttcgagagcctccgataagaggtttaacattccaaaatcactactataaggat |
210 |
Q |
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||||||| ||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||| ||||| ||||| |||||||| ||||||| | |
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| T |
4494967 |
gtgaatgaaggaagaactaactgatactcaatctgggagttaaccttttggagagcctcggataagaggcttaaccttccagaatcactattataagggt |
4495066 |
T |
|
| Q |
211 |
tgtcttcatatatagctataactttttgagagttgaaactatggacaatatcagctatgaa |
271 |
Q |
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|||||||||||||||||||||| ||||||||||||||| ||||| ||||||| |||||| |
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|
| T |
4495067 |
tgtcttcatatatagctataaccttttgagagttgaaagcatggattatatcagatatgaa |
4495127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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