View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12521_low_4 (Length: 477)

Name: NF12521_low_4
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12521_low_4
NF12521_low_4
[»] chr6 (1 HSPs)
chr6 (1-399)||(25520836-25521234)
[»] chr3 (1 HSPs)
chr3 (1-398)||(8524846-8525252)
[»] chr5 (12 HSPs)
chr5 (1-336)||(42125391-42125726)
chr5 (1-324)||(41711675-41711998)
chr5 (1-313)||(42130616-42130928)
chr5 (1-327)||(34230688-34231026)
chr5 (57-327)||(34238743-34239013)
chr5 (57-305)||(41569924-41570172)
chr5 (16-237)||(42118804-42119026)
chr5 (345-390)||(42119134-42119179)
chr5 (135-203)||(41433422-41433490)
chr5 (135-278)||(41446146-41446289)
chr5 (345-395)||(34230632-34230682)
chr5 (345-395)||(34238687-34238737)
[»] chr4 (1 HSPs)
chr4 (1-303)||(11120165-11120467)
[»] chr2 (1 HSPs)
chr2 (3-305)||(12250214-12250516)


Alignment Details
Target: chr6 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 25521234 - 25520836
Alignment:
Q  1 tgtaatttagaaagatgtgagatttgagttggaattttacctttaaaggaactaccagacaagtaaagatgtgtaagactctgaaacccaccaaacttag 100  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25521234 tgtaatttggaaaggtgtgagatttgagttggaattttacctttaaagaaactaccagacaagtaaagatgtgtaagactctgaaacccaccaaacttag 25521135  T
Q  101 catgaaaatgagagccagtgaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaatataccttgaag 200  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||| ||||||||||| ||    
T  25521134 catgaaaatgggagccagtgaaatcattgtaagaaaggttgagtttttgaatatgagcaagatggaaaagagtactattaggatggaatataccttggag 25521035  T
Q  201 gccttcacagccaaggttgaggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatcagtctcatatttccatgttgtt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  25521034 gccttcacagccaaggttgaggccaatcacgcgaccaaaagtggtgtcgcatgtgacaccatgccatgagcagcaatcagtcccatatttccatgttgct 25520935  T
Q  301 gtttttagaagagattcatcacaaggataagaagattcagaatttatagtgaaggaggatttaaactgaagcagagcagagctctcatcacgatggcat 399  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25520934 gttttcagaagagattcatcacaaggataagaagattcagaatttatagtgaaggaggatttaaactgaagcagagcagagctctcatcacgatggcat 25520836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 8524846 - 8525252
Alignment:
Q  1 tgtaatttagaaagatgtgagatttgagttggaattttacctttaaaggaactaccagacaagtaaagatgtgtaagactctgaaacccaccaaacttag 100  Q
    ||||||||  |||| |||||||||||||||||||||| |||||||| | |||||  |||||||| ||||||||| ||||||  ||||||||||||||| |    
T  8524846 tgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaggtaactatgagacaagtcaagatgtgtgagactcaaaaacccaccaaactttg 8524945  T
Q  101 catgaaaatgagagccagtgaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaatataccttgaag 200  Q
     |||||||| |||||||| ||||||||||| || |||||||||||||| ||||| ||||||||| ||||| ||||| |||||||  | ||| ||||||||    
T  8524946 aatgaaaataagagccagagaaatcattgttagcaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattgagtatgccttgaag 8525045  T
Q  201 gccttcacagccaaggttgaggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatcagtctcatatttccatgttgtt 300  Q
     |||||||||||||||||||||||||||||| |||||    ||| ||| || |||||||||| |||||||||||||||| |||||| ||||||||||| |    
T  8525046 accttcacagccaaggttgaggccaatcacgtgaccactgatggtgtcacacgtgacaccatcccatgagcagcaatcaatctcatttttccatgttgct 8525145  T
Q  301 gtttt---tagaagagattcatcac------aaggataagaagattcagaatttatagtgaaggaggatttaaactgaagcagagcagagctctcatcac 391  Q
    |||||    ||| ||||||||||||      ||| ||||| || ||||||||||||||||||||| || || || ||||||| |||||||||||||| |     
T  8525146 gttttcaaaagacgagattcatcacaaaaataagaataagcaggttcagaatttatagtgaaggatgacttgaaatgaagcaaagcagagctctcataat 8525245  T
Q  392 gatggca 398  Q
    |||||||    
T  8525246 gatggca 8525252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 42125391 - 42125726
Alignment:
Q  1 tgtaatttagaaagatgtgagatttgagttggaattttacctttaaaggaactaccagacaagtaaagatgtgtaagactctgaaacccaccaaacttag 100  Q
    |||||||| ||||| |||||||||||| ||||||||| |||||||||| |||||| |||||||| |||||||| |||||||  |||||||||||||||||    
T  42125391 tgtaatttggaaaggtgtgagatttgaattggaatttcacctttaaagaaactacgagacaagtcaagatgtgcaagactcataaacccaccaaacttag 42125490  T
Q  101 catgaaaatgagagccagtgaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaatataccttgaag 200  Q
     |||||||||||||  || ||||||||||| ||||||||||||| ||| || |||| ||||||  ||||| ||||| |||||||| | | ||||||||||    
T  42125491 aatgaaaatgagagtaagagaaatcattgttagaaaggttgagtgtttgaagatgaacaagattgaaaagggtactgttaggatgtagtttaccttgaag 42125590  T
Q  201 gccttcacagccaaggttgaggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatcagtctcatatttccatgttgtt 300  Q
    ||||||||||||||| ||||||||||||||| ||| |    |||  || || |||||||||| ||||||||||||||||||| ||| ||||||||||| |    
T  42125591 gccttcacagccaagattgaggccaatcacgtgacgagtgatggtatcacacgtgacaccattccatgagcagcaatcagtcccatttttccatgttgct 42125690  T
Q  301 gtttttagaagagattcatcacaaggataagaagat 336  Q
    ||||| ||||||||| ||||||||| |||| |||||    
T  42125691 gttttcagaagagatccatcacaagaataaaaagat 42125726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 41711998 - 41711675
Alignment:
Q  1 tgtaatttagaaagatgtgagatttgagttggaattttacctttaaaggaactaccagacaagtaaagatgtgtaagactctgaaacccaccaaacttag 100  Q
    |||||||| || || |||||||||||| ||||||||| ||||| |||| |||||  ||||| || |||||||| |||||||  ||||| |||||||||||    
T  41711998 tgtaatttggagaggtgtgagatttgaattggaatttcaccttcaaagtaactataagacatgtcaagatgtgcaagactcaaaaaccgaccaaacttag 41711899  T
Q  101 catgaaaatgagagccagtgaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaatataccttgaag 200  Q
     ||||||||| |||  || ||||||||||||||||||||||||| |||  | |||| ||||||| ||||| ||| |||||||||| ||||||||||||||    
T  41711898 aatgaaaatgggagtaagagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatggaaaagagtattattaggatggaatataccttgaag 41711799  T
Q  201 gccttcacagccaaggttgaggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatcagtctcatatttccatgttgtt 300  Q
    ||| |||||||||||||||||||||| |||||||||| |   || ||| |||||||||||  |||||||||| ||||||||||||| |||||||||||||    
T  41711798 gccatcacagccaaggttgaggccaaccacgcgaccatagacggtgtcacatgtgacaccgggccatgagcaacaatcagtctcatttttccatgttgtt 41711699  T
Q  301 gtttttagaagagattcatcacaa 324  Q
    ||||||||||||| |||| |||||    
T  41711698 gtttttagaagaggttcaccacaa 41711675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 42130616 - 42130928
Alignment:
Q  1 tgtaatttagaaagatgtgagatttgagttggaattttacctttaaaggaactaccagacaagtaaagatgtgtaagactctgaaacccaccaaacttag 100  Q
    |||||||| || || || ||||||||||||||||||| |||||  |||  |||| ||||||||| ||||||||||||||||||||| |||| |||||||     
T  42130616 tgtaatttggataggtgagagatttgagttggaatttcaccttctaagttactatcagacaagtcaagatgtgtaagactctgaaatccacaaaacttat 42130715  T
Q  101 catgaaaatgagagccagtgaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaatataccttgaag 200  Q
     ||||||||||||| ||  ||||||||||||||||||||||||| |||  | |||| ||||||||||||| |||||||||||||  ||| |||||  |||    
T  42130716 aatgaaaatgagagtcaaagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatgaaaaagggtactattaggattgaatgtacctgtaag 42130815  T
Q  201 gccttcacagccaaggttgaggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatcagtctcatatttccatgttgtt 300  Q
    |||||||||||||||||||||| |||||||| ||||| |    | ||| || ||||| |||| ||||||||||||||||||| ||| ||||||||||| |    
T  42130816 gccttcacagccaaggttgaggtcaatcacgtgaccagagactgtgtcacacgtgacgccattccatgagcagcaatcagtcccatttttccatgttgct 42130915  T
Q  301 gtttttagaagag 313  Q
    ||||| |||||||    
T  42130916 gttttaagaagag 42130928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 34231026 - 34230688
Alignment:
Q  1 tgtaatttagaaagatgtgagatttgagttggaattttacctttaaaggaactaccagacaagtaaagatgtgtaagactctgaaacccaccaaacttag 100  Q
    |||||||| ||||| |  ||||||||||  ||||||| | ||| |||| ||| |  ||||||||  |||||||||||||||  |||||| ||||||||||    
T  34231026 tgtaatttggaaaggtccgagatttgagaaggaatttcatcttgaaagaaacaagaagacaagtcgagatgtgtaagactcataaacccgccaaacttag 34230927  T
Q  101 catgaaaatgagagccagtgaaatc------------attgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaa 188  Q
     ||||||||| ||||||| ||||||            |||||  |||||||||||  ||| ||  ||||||||||| ||||| |||||||||||||| |     
T  34230926 aatgaaaatgggagccagagaaatcgttagagaaataattgttcgaaaggttgagcatttgaaggtgagcaagatggaaaagggtactattaggatggag 34230827  T
Q  189 tataccttgaaggccttcacagccaaggttgaggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatcagtctcatat 288  Q
    ||||||||||| |||||||||||||||||| |||||||| ||| ||||| |   || ||| || |||||||||||||||||||||||||||||| ||| |    
T  34230826 tataccttgaaagccttcacagccaaggttaaggccaatgacgtgaccagatacggtgtcacacgtgacaccatgccatgagcagcaatcagtcccattt 34230727  T
Q  289 ttccatgttgttgtttttagaagagattcatcacaagga 327  Q
    |||||||||| |||||| | | |||||| | ||||||||    
T  34230726 ttccatgttgctgttttcataggagatttaacacaagga 34230688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 57 - 327
Target Start/End: Complemental strand, 34239013 - 34238743
Alignment:
Q  57 agacaagtaaagatgtgtaagactctgaaacccaccaaacttagcatgaaaatgagagccagtgaaatcattgtaagaaaggttgagttttttaatatga 156  Q
    |||||||| ||||||||||||||||  |||||  |||||||||| || |||||  || |||  |||| |||||| ||||||||||||| |||  | ||||    
T  34239013 agacaagtcaagatgtgtaagactcgtaaacctgccaaacttagaatcaaaataggaaccatagaaaccattgttagaaaggttgagtgtttggagatga 34238914  T
Q  157 gcaagatgaaaaagtgtactattaggatgaaatataccttgaaggccttcacagccaaggttgaggccaatcacgcgaccaaaagtggcgtcgcatgtga 256  Q
     ||| ||  ||||| |||||||||||||| | ||||||||||| ||||||||| |||||||| |||||||| ||| ||||| |   || ||| || ||||    
T  34238913 acaatattgaaaagggtactattaggatggagtataccttgaaagccttcacaaccaaggttaaggccaatgacgtgaccagatacggtgtcacacgtga 34238814  T
Q  257 caccatgccatgagcagcaatcagtctcatatttccatgttgttgtttttagaagagattcatcacaagga 327  Q
    |||||||||||||||||||||||||| ||| ||||||||||| |||||| | | |||||| | ||||||||    
T  34238813 caccatgccatgagcagcaatcagtcccatttttccatgttgctgttttcataggagatttaacacaagga 34238743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 57 - 305
Target Start/End: Complemental strand, 41570172 - 41569924
Alignment:
Q  57 agacaagtaaagatgtgtaagactctgaaacccaccaaacttagcatgaaaatgagagccagtgaaatcattgtaagaaaggttgagttttttaatatga 156  Q
    |||||||| ||||||||||||||||| ||| |||||||||| || ||| ||||  |||     ||||||||||| |||||||||||||  ||  | ||||    
T  41570172 agacaagtcaagatgtgtaagactcttaaatccaccaaactgagaatgcaaattggagttgaagaaatcattgtgagaaaggttgagtgattggagatga 41570073  T
Q  157 gcaagatgaaaaagtgtactattaggatgaaatataccttgaaggccttcacagccaaggttgaggccaatcacgcgaccaaaagtggcgtcgcatgtga 256  Q
    |||||||||||||| ||  | ||||||| || | |||||||||||| |||||||||||||| ||| ||||||||||||||| |    |||||||| ||||    
T  41570072 gcaagatgaaaaagagtgttgttaggataaattttaccttgaaggcattcacagccaaggtcgagaccaatcacgcgaccagagacagcgtcgcacgtga 41569973  T
Q  257 caccatgccatgagcagcaatcagtctcatatttccatgttgttgtttt 305  Q
    ||||||||||||| || ||||  ||||||  ||||||||||| ||||||    
T  41569972 caccatgccatgaacaacaatttgtctcaattttccatgttgatgtttt 41569924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 42118804 - 42119026
Alignment:
Q  16 tgtgagatttgagttggaattttacctttaaaggaa-ctaccagacaagtaaagatgtgtaagactctgaaacccaccaaacttagcatgaaaatgagag 114  Q
    |||||||||||||||||||||| |||||||||| || |||  |||||||| ||||||||||||||||  ||| ||||||||||||| ||||||| ||||     
T  42118804 tgtgagatttgagttggaatttcacctttaaagaaaactatgagacaagtcaagatgtgtaagactcaaaaaaccaccaaacttagaatgaaaacgagaa 42118903  T
Q  115 ccagtgaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaatataccttgaaggccttcacagccaa 214  Q
     | | ||||| |||| | | |||||| ||| |||  | |||| ||||||| ||||| ||| | |||||||| ||| ||||   ||||| || | ||||||    
T  42118904 gcggagaaattattggatgcaaggtttagtgtttggagatgaacaagatggaaaagggtattgttaggatgtaatttaccagtaaggcgttaaaagccaa 42119003  T
Q  215 ggttgaggccaatcacgcgacca 237  Q
    ||||||| ||||||||| |||||    
T  42119004 ggttgagaccaatcacgtgacca 42119026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 390
Target Start/End: Original strand, 42119134 - 42119179
Alignment:
Q  345 tatagtgaaggaggatttaaactgaagcagagcagagctctcatca 390  Q
    ||||||||||||||| || |||||||||||||||||||||||||||    
T  42119134 tatagtgaaggaggacttgaactgaagcagagcagagctctcatca 42119179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 41433422 - 41433490
Alignment:
Q  135 aaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaatataccttgaaggcc 203  Q
    |||||||||| |||  | ||||| |||||||||||||||||| || |||||||  ||||||||||||||    
T  41433422 aaggttgagtgtttggagatgagaaagatgaaaaagtgtactgttgggatgaatcataccttgaaggcc 41433490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 278
Target Start/End: Original strand, 41446146 - 41446289
Alignment:
Q  135 aaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaatataccttgaaggccttcacagccaaggttgaggccaatcacgcga 234  Q
    |||||||||| |||  | ||||| |||||||||||||||||| || |||||||  |||||||||||| | |  ||||  ||||  | |||||| ||| ||    
T  41446146 aaggttgagtgtttggagatgagaaagatgaaaaagtgtactgttgggatgaataataccttgaaggtcattgcagctgaggtctaagccaattacgtga 41446245  T
Q  235 ccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatc 278  Q
    ||| || | | ||| || ||||||||| |||||||||| |||||    
T  41446246 ccagaaattgtgtcacaggtgacaccaagccatgagcaacaatc 41446289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 395
Target Start/End: Complemental strand, 34230682 - 34230632
Alignment:
Q  345 tatagtgaaggaggatttaaactgaagcagagcagagctctcatcacgatg 395  Q
    ||||||||||||||| || |||||||||| |||| ||||||||||| ||||    
T  34230682 tatagtgaaggaggacttgaactgaagcaaagcaaagctctcatcatgatg 34230632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 395
Target Start/End: Complemental strand, 34238737 - 34238687
Alignment:
Q  345 tatagtgaaggaggatttaaactgaagcagagcagagctctcatcacgatg 395  Q
    ||||||||||||||| || |||||||||| |||| ||||||||||| ||||    
T  34238737 tatagtgaaggaggacttgaactgaagcaaagcaaagctctcatcatgatg 34238687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 11120165 - 11120467
Alignment:
Q  1 tgtaatttagaaagatgtgagatttgagttggaattttacctttaaaggaactaccagacaagtaaagatgtgtaagactctgaaacccaccaaacttag 100  Q
    |||||||| ||||||| |||||||||||||||||||| ||| | || |  ||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  11120165 tgtaatttggaaagatatgagatttgagttggaatttcaccataaatgttactataagacaagtaaagatgtgtaagactctgaaacccaccaaacttag 11120264  T
Q  101 catgaaaatgagagccagtgaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaatataccttgaag 200  Q
     ||||||| ||||||| | ||||| ||||||   |||||||||| |||  | |||| ||||||| ||||| |||||||| ||||| ||||| ||||||||    
T  11120265 aatgaaaacgagagccggagaaattattgtatacaaggttgagtgtttggagatgaacaagatggaaaagggtactattcggatgtaatatgccttgaag 11120364  T
Q  201 gccttcacagccaaggttgaggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatcagtctcatatttccatgttgtt 300  Q
     |||||||||||||| ||||||||||||||||||||| |  ||| |||||| |||||||||| ||||||||||||||||||| ||| |||||||||||||    
T  11120365 accttcacagccaagattgaggccaatcacgcgaccagagatggtgtcgcacgtgacaccattccatgagcagcaatcagtcccatttttccatgttgtt 11120464  T
Q  301 gtt 303  Q
    |||    
T  11120465 gtt 11120467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 3 - 305
Target Start/End: Original strand, 12250214 - 12250516
Alignment:
Q  3 taatttagaaagatgtgagatttgagttggaattttacctttaaaggaactaccagacaagtaaagatgtgtaagactctgaaacccaccaaacttagca 102  Q
    |||||| ||||| ||||||||||||||||||| || |||||||||| |||||  |||||||| ||||||||||||| |    || ||||||||||||| |    
T  12250214 taatttggaaaggtgtgagatttgagttggaacttcacctttaaagaaactattagacaagtcaagatgtgtaagattaaagaatccaccaaacttagaa 12250313  T
Q  103 tgaaaatgagagccagtgaaatcattgtaagaaaggttgagttttttaatatgagcaagatgaaaaagtgtactattaggatgaaatataccttgaaggc 202  Q
    |||||||| |||   | |||||||||| |||||||||||||| |||  | |||||||||||  ||||| ||||||||||| || |||||||| | |||||    
T  12250314 tgaaaatgggagtttgagaaatcattggaagaaaggttgagtgtttggagatgagcaagatcgaaaagggtactattaggttgtaatataccatcaaggc 12250413  T
Q  203 cttcacagccaaggttgaggccaatcacgcgaccaaaagtggcgtcgcatgtgacaccatgccatgagcagcaatcagtctcatatttccatgttgttgt 302  Q
    |||||  |||||||| ||||||||||||  ||||| |  | | ||| ||||||||||||||||||||||||||||||||| ||| || |||||||| |||    
T  12250414 cttcatcgccaaggtcgaggccaatcacatgaccatagattgtgtcacatgtgacaccatgccatgagcagcaatcagtcccattttgccatgttgctgt 12250513  T
Q  303 ttt 305  Q
    |||    
T  12250514 ttt 12250516  T

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