View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12521_low_42 (Length: 273)
Name: NF12521_low_42
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12521_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 46613148 - 46613404
Alignment:
| Q |
1 |
aagaaaaagtttctttgatttcaggggaatccaatcaatgacaaggagaaatcaggataaattagcaatcataattcattataaactgtaacatatgtat |
100 |
Q |
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| T |
46613148 |
aagaaaaagtttctttgatttcaggggaatccaatcaatgacaaggagaaatcaggataaattagcaatcataattcattataaaatgtaacatatgtat |
46613247 |
T |
|
| Q |
101 |
agaaaatttgcagacaaaggccactctacaattaaacaagaattaagggaaaggaaacactatataagaattgagagagtgacatggttattcatttaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46613248 |
agaaaatttgcagacaaaggccactctacaattaaacatgaattaaggtgaaggaaacactatataagaattgagagagtgacatggttattcatttaat |
46613347 |
T |
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| Q |
201 |
gccacttttcaaaaagctcgagcttagaagtaatgatattcaatatgatgatacata |
257 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46613348 |
gccacttttaaaaaagctcgagcttagaagtaatgatattcaatatgatgatacata |
46613404 |
T |
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