View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12521_low_5 (Length: 473)
Name: NF12521_low_5
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12521_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 19 - 460
Target Start/End: Original strand, 1650383 - 1650826
Alignment:
| Q |
19 |
agtaatagcatcctctctttcttaacttacatttataccataaactagtcctagactaatatggaggaagacgtgccttaaaatattcatagaatacacc |
118 |
Q |
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| T |
1650383 |
agtaatagcatcctctctttcttaacttacatttataccataaactagtcctagactaatatggaggaagacgtgccttaaaatattcatagaatacacc |
1650482 |
T |
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| Q |
119 |
tataaatcacgaaacataaagtcatttagaaaggacataaactcaca--caaatacaagaagaagagccaagatctaaacatggaagccaacacttttgc |
216 |
Q |
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| T |
1650483 |
tataaatcacaaaacataaagtcatttagaaaggacataaactcacacacaaatacaagaagaagagccaagatctaaacatggaagccaacacttttgc |
1650582 |
T |
|
| Q |
217 |
aagtttttctttaggtcatgttctcaaatttgcaattttgattttgctagcaatatctagcattacttcagcatgtgaggacaattctacaatccctacc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1650583 |
aagtttttctttaggtcatgttctcaaatttgcaattttgattttgctagcaatatctagcatcacttcagcatgtgaggacaattctacaatccctacc |
1650682 |
T |
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| Q |
317 |
aattcccccaaaacaaacctttcatacacttccaatgctcccttaaattccaccaacaccaatgatttcaaaacctatataaaaaattcatgcaattcaa |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1650683 |
aattcccccaaaacaaacctttcatacacttccaatgctccctcaaattccaccaacaccaatgatttcaaaacctatataaaaaattcatgcaattcaa |
1650782 |
T |
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| Q |
417 |
ccacatatccatatatatgttacaaatctttatctccctatgct |
460 |
Q |
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| T |
1650783 |
ccacatatccatatatatgttacaaatctttatctccctatgct |
1650826 |
T |
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