View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12521_low_50 (Length: 240)
Name: NF12521_low_50
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12521_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 42518941 - 42519149
Alignment:
| Q |
14 |
agatgaataactcagtagcttcagagaacagttttattattgaaagtgatgaagaagatgataaggattttaacaaaggtgatgatggaaatgattctga |
113 |
Q |
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| T |
42518941 |
agatgaataactcagtagcttcagagaacagttttattattgaaagtgatgaagaagatgataaggattttaacaaaggtgatgatggaaatgattctga |
42519040 |
T |
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| Q |
114 |
ttcttccaattactcaaatgaaaatccaccacagaggaaacaaagttcttataatccatcatggcctcagagttacaggttaagtccttttttcaatccc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42519041 |
ttcttccaattactcaaatgaaaatccaccacagaggaaacaaagttcttataatccatcatggcctcagagttacaggttaagtccttttttcaatccc |
42519140 |
T |
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| Q |
214 |
cctagattt |
222 |
Q |
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||||||||| |
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| T |
42519141 |
cctagattt |
42519149 |
T |
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