View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12521_low_51 (Length: 238)

Name: NF12521_low_51
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12521_low_51
NF12521_low_51
[»] chr5 (3 HSPs)
chr5 (13-176)||(12404913-12405076)
chr5 (97-140)||(39097188-39097231)
chr5 (100-141)||(10957384-10957425)
[»] chr7 (5 HSPs)
chr7 (97-142)||(48158813-48158858)
chr7 (97-139)||(41841088-41841130)
chr7 (97-142)||(45004907-45004952)
chr7 (97-141)||(22310784-22310828)
chr7 (101-145)||(41360005-41360049)
[»] chr2 (4 HSPs)
chr2 (97-140)||(33502967-33503010)
chr2 (97-142)||(9943345-9943390)
chr2 (101-142)||(36374238-36374279)
chr2 (97-140)||(15928552-15928595)
[»] chr6 (6 HSPs)
chr6 (96-142)||(34620808-34620854)
chr6 (96-142)||(34748245-34748291)
chr6 (97-143)||(10400814-10400860)
chr6 (97-127)||(33136601-33136631)
chr6 (97-142)||(25195482-25195527)
chr6 (97-141)||(26550442-26550486)
[»] chr4 (4 HSPs)
chr4 (97-142)||(46344949-46344994)
chr4 (100-142)||(39438710-39438752)
chr4 (66-142)||(27967925-27967999)
chr4 (97-142)||(35064985-35065030)
[»] chr3 (2 HSPs)
chr3 (97-142)||(52925729-52925774)
chr3 (96-142)||(3776461-3776507)
[»] chr1 (2 HSPs)
chr1 (97-142)||(20720739-20720783)
chr1 (97-139)||(36780235-36780277)
[»] chr8 (3 HSPs)
chr8 (97-142)||(39648263-39648308)
chr8 (97-141)||(28805126-28805170)
chr8 (97-141)||(42455835-42455879)


Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 12404913 - 12405076
Alignment:
Q  13 tggacatcatgattggaggcaaaagctacaagttcaaactttaagttagaatgaattattgaggcaaagtcatttctaatccagaaccaaacatgtcaaa 112  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12404913 tggaaatcatgtttggaggcaaaagctacaagttcaaactttaagttagaatgaattattgaggcaaagtcatttctaatccagaaccaaacatgtcaaa 12405012  T
Q  113 atcaattatacaccttcataatcaattttgcctcaaagaaatggaaacaaacatgtactaagtt 176  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  12405013 atcaattatacaccttcataatcaattttatctcaaagaaatggaaacaaacatgtactaagtt 12405076  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 39097231 - 39097188
Alignment:
Q  97 aaccaaacatgtcaaaatcaattatacaccttcataatcaattt 140  Q
    ||||||||||||||||||||||| |||||||  |||||||||||    
T  39097231 aaccaaacatgtcaaaatcaattctacacctctataatcaattt 39097188  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 10957425 - 10957384
Alignment:
Q  100 caaacatgtcaaaatcaattatacaccttcataatcaatttt 141  Q
    |||||||||||||||||||| ||||||||  |||||||||||    
T  10957425 caaacatgtcaaaatcaattctacacctttttaatcaatttt 10957384  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 48158858 - 48158813
Alignment:
Q  97 aaccaaacatgtcaaaatcaattatacaccttcataatcaattttg 142  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||    
T  48158858 aaccaaacatgtcaaaatcaattttacgccttcataatcaattttg 48158813  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 139
Target Start/End: Complemental strand, 41841130 - 41841088
Alignment:
Q  97 aaccaaacatgtcaaaatcaattatacaccttcataatcaatt 139  Q
    |||||||||||||||| |||||| ||||||| |||||||||||    
T  41841130 aaccaaacatgtcaaagtcaattttacacctccataatcaatt 41841088  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 45004952 - 45004907
Alignment:
Q  97 aaccaaacatgtcaaaatcaattatacaccttcataatcaattttg 142  Q
    ||||||||||||||||||||||| |||||||  | |||||||||||    
T  45004952 aaccaaacatgtcaaaatcaattctacacctctagaatcaattttg 45004907  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 22310784 - 22310828
Alignment:
Q  97 aaccaaacatgtcaaaatcaattatacaccttcataatcaatttt 141  Q
    |||||||||| ||||||||||||||||| ||| | ||||||||||    
T  22310784 aaccaaacatatcaaaatcaattatacatctttagaatcaatttt 22310828  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 41360049 - 41360005
Alignment:
Q  101 aaacatgtcaaaatcaattatacaccttcataatcaattttgcct 145  Q
    |||||||||||||||||||||||| ||| | ||| ||||||||||    
T  41360049 aaacatgtcaaaatcaattatacatctttagaattaattttgcct 41360005  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 33502967 - 33503010
Alignment:
Q  97 aaccaaacatgtcaaaatcaattatacaccttcataatcaattt 140  Q
    ||||||||||||||||||||||| |||||||||| |||||||||    
T  33502967 aaccaaacatgtcaaaatcaattttacaccttcagaatcaattt 33503010  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 9943390 - 9943345
Alignment:
Q  97 aaccaaacatgtcaaaatcaattatacaccttcataatcaattttg 142  Q
    |||||||||||| |||||||||| |||||||||| |||||||||||    
T  9943390 aaccaaacatgttaaaatcaattttacaccttcagaatcaattttg 9943345  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 36374279 - 36374238
Alignment:
Q  101 aaacatgtcaaaatcaattatacaccttcataatcaattttg 142  Q
    |||||||||||||||||||||||||||| | |||||||||||    
T  36374279 aaacatgtcaaaatcaattatacacctttaaaatcaattttg 36374238  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 15928552 - 15928595
Alignment:
Q  97 aaccaaacatgtcaaaatcaattatacaccttcataatcaattt 140  Q
    ||||||||||||||||||||||| ||||||| || |||||||||    
T  15928552 aaccaaacatgtcaaaatcaattctacacctccagaatcaattt 15928595  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 34620854 - 34620808
Alignment:
Q  96 gaaccaaacatgtcaaaatcaattatacaccttcataatcaattttg 142  Q
    |||||||||||||||||||||||| |||||||| | |||||||||||    
T  34620854 gaaccaaacatgtcaaaatcaattctacacctttagaatcaattttg 34620808  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 34748291 - 34748245
Alignment:
Q  96 gaaccaaacatgtcaaaatcaattatacaccttcataatcaattttg 142  Q
    |||||||||||||||||||||||| |||||||| | |||||||||||    
T  34748291 gaaccaaacatgtcaaaatcaattctacacctttagaatcaattttg 34748245  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 10400814 - 10400860
Alignment:
Q  97 aaccaaacatgtcaaaatcaattatacaccttcataatcaattttgc 143  Q
    |||||||||| ||||||||||||||||||||  | ||||||||||||    
T  10400814 aaccaaacatatcaaaatcaattatacacctctagaatcaattttgc 10400860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 127
Target Start/End: Original strand, 33136601 - 33136631
Alignment:
Q  97 aaccaaacatgtcaaaatcaattatacacct 127  Q
    |||||||||||||||||||||||||||||||    
T  33136601 aaccaaacatgtcaaaatcaattatacacct 33136631  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 25195482 - 25195527
Alignment:
Q  97 aaccaaacatgtcaaaatcaattatacaccttcataatcaattttg 142  Q
    |||||||||||||| |||||||||||||| | || |||||||||||    
T  25195482 aaccaaacatgtcagaatcaattatacacatccagaatcaattttg 25195527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 26550486 - 26550442
Alignment:
Q  97 aaccaaacatgtcaaaatcaattatacaccttcataatcaatttt 141  Q
    ||||||||||||||||||||||| |||||||  ||||||| ||||    
T  26550486 aaccaaacatgtcaaaatcaattctacacctctataatcattttt 26550442  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 46344949 - 46344994
Alignment:
Q  97 aaccaaacatgtcaaaatcaattatacaccttcataatcaattttg 142  Q
    |||||||||||||| ||| |||||||||||| ||||||||||||||    
T  46344949 aaccaaacatgtcagaattaattatacacctccataatcaattttg 46344994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 39438752 - 39438710
Alignment:
Q  100 caaacatgtcaaaatcaattatacaccttcataatcaattttg 142  Q
    |||||||||||||||||||| ||||||| || |||||||||||    
T  39438752 caaacatgtcaaaatcaattttacacctccaaaatcaattttg 39438710  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 27967925 - 27967999
Alignment:
Q  66 aattattgaggcaaagtcatttctaatccagaaccaaacatgtcaaaatcaattatacaccttcataatcaattttg 142  Q
    |||| |||||||||| ||| ||||| ||||  |||| |||||||| |||||||| |||||||  |||||||||||||    
T  27967925 aattcttgaggcaaaatcaattctactcca--accatacatgtcataatcaattctacacctatataatcaattttg 27967999  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 35065030 - 35064985
Alignment:
Q  97 aaccaaacatgtcaaaatcaattatacaccttcataatcaattttg 142  Q
    ||||||| |||||| |||||||| ||||||| ||||||||||||||    
T  35065030 aaccaaaaatgtcataatcaattctacacctccataatcaattttg 35064985  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 52925729 - 52925774
Alignment:
Q  97 aaccaaacatgtcaaaatcaattatacaccttcataatcaattttg 142  Q
    |||||||||||||||||||||||||||||||  | |||||||||||    
T  52925729 aaccaaacatgtcaaaatcaattatacacctctagaatcaattttg 52925774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 3776507 - 3776461
Alignment:
Q  96 gaaccaaacatgtcaaaatcaattatacaccttcataatcaattttg 142  Q
    |||||||||||||||||||||||| |||||||  |||| ||||||||    
T  3776507 gaaccaaacatgtcaaaatcaattctacacctctataaccaattttg 3776461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 20720783 - 20720739
Alignment:
Q  97 aaccaaacatgtcaaaatcaattatacaccttcataatcaattttg 142  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||    
T  20720783 aaccaaacatgtcaaaatcaattctacacctt-ataatcaattttg 20720739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 36780235 - 36780277
Alignment:
Q  97 aaccaaacatgtcaaaatcaattatacaccttcataatcaatt 139  Q
    |||||||||| |||||||||||| ||||||| |||||||||||    
T  36780235 aaccaaacatatcaaaatcaattctacacctccataatcaatt 36780277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 39648263 - 39648308
Alignment:
Q  97 aaccaaacatgtcaaaatcaattatacaccttcataatcaattttg 142  Q
    |||||||||||||||||||||||||||| ||  | |||||||||||    
T  39648263 aaccaaacatgtcaaaatcaattatacatctctagaatcaattttg 39648308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 28805170 - 28805126
Alignment:
Q  97 aaccaaacatgtcaaaatcaattatacaccttcataatcaatttt 141  Q
    ||||||||||  |||| ||||||||||||||||| ||||||||||    
T  28805170 aaccaaacataccaaagtcaattatacaccttcaaaatcaatttt 28805126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 42455879 - 42455835
Alignment:
Q  97 aaccaaacatgtcaaaatcaattatacaccttcataatcaatttt 141  Q
    ||||||||||||||||||||||| |||  || |||||||||||||    
T  42455879 aaccaaacatgtcaaaatcaattctactgctccataatcaatttt 42455835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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