View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12521_low_54 (Length: 222)
Name: NF12521_low_54
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12521_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 1786660 - 1786872
Alignment:
| Q |
1 |
tcaatctttattaacatcttaaacacattgagtataatgcttagaattgccataaagttgacagaattatatgatgacaccgtgattttgttaaaaatgt |
100 |
Q |
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| T |
1786660 |
tcaatctttattaacatcttaaacaaattgagtacaatgcttagaattgccataaagttgacagaattatatgatgacaccttgattttgttaaaattgt |
1786759 |
T |
|
| Q |
101 |
gataccgtaattttgtcaaattcactagtaatcgaaacatatat--taatttgcggttttggtacaacatgacatgtagattaataattgtggtaaacga |
198 |
Q |
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| T |
1786760 |
gatatcgaaattttgtcaaattcactagtaatcgaaacatatatactaatttttggttttggtacgacatgacacgtagattaataattgtggtaaaagg |
1786859 |
T |
|
| Q |
199 |
agtcttgtgttag |
211 |
Q |
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||||||||||||| |
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| T |
1786860 |
agtcttgtgttag |
1786872 |
T |
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