View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12521_low_55 (Length: 206)
Name: NF12521_low_55
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12521_low_55 |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 31 - 206
Target Start/End: Complemental strand, 1550389 - 1550214
Alignment:
| Q |
31 |
ttaaactataacgcaacaattttcaaaaaccctaaaattcataaattttttctaaaccctaattgcgctgttgagtttacagtgtcgttgcaaccatgta |
130 |
Q |
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| T |
1550389 |
ttaaactataacgcaacaattttcaataaccctaaaattcataaattttttctaaaccctaattgcgctgttgagtttacagtgtcgttgcaaccatgta |
1550290 |
T |
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| Q |
131 |
cggcggtggtgagtgcaataacaagttatgttttcttcctatttctcttattgttctgatagttcttaacattgtt |
206 |
Q |
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| T |
1550289 |
cggcggtggtgagtgcaataacaagttatgttttcttcctattactcttattgttctgatagttcttaacattgtt |
1550214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 33 - 206
Target Start/End: Original strand, 23022641 - 23022805
Alignment:
| Q |
33 |
aaactataacgcaacaattttcaaaaaccctaaaattcataaattttttctaaaccctaattgcgctgttgagtttacagtgtcgttgcaaccatgtacg |
132 |
Q |
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| T |
23022641 |
aaaccataacccaacaattttcaaaaaccctaaaattcataagttttttctaaatcctaattgcgttgttgagtttacagtgccgttgcaactatgtacg |
23022740 |
T |
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| Q |
133 |
gcggtggtgagtgcaataacaagttatgttttcttcctatttctcttattgttctgatagttcttaacattgtt |
206 |
Q |
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| T |
23022741 |
gtggtggtgagtgcggaaacgagttatgttgtct---------tcttattgttctgatagttcttaacattgtt |
23022805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 8e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 33 - 206
Target Start/End: Original strand, 27997721 - 27997896
Alignment:
| Q |
33 |
aaactataacgcaacaattttcaaaaaccctaaaattcataaattttttctaaaccctaattgcgctgttgagtttacagtgtcgttgcaaccatgtacg |
132 |
Q |
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| T |
27997721 |
aaaccataacgcaacaattttcaaaaaccctaaaattcataagttttttctaaaccctaattgcgttgttgagtttacagtgtcgttgcaactatgtacg |
27997820 |
T |
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| Q |
133 |
gcggtggtgagtgcaataacaagttatgttttcttcctatt--tctcttattgttctgatagttcttaacattgtt |
206 |
Q |
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| T |
27997821 |
atggtggtgagtgcggaaacgagttatgttatcttcttattactctcttattgttctgatagttcttaacattgtt |
27997896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 28005146 - 28005236
Alignment:
| Q |
118 |
ttgcaaccatgtacggcggtggtgagtgcaataacaagttatgttttcttcctatt--tctcttattgttctgatagttcttaacattgtt |
206 |
Q |
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||||| ||||||||||||| ||||||||| | ||||| ||||||||||||| | || ||||||||| ||||| || |||| ||||||||| |
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| T |
28005146 |
ttgcagccatgtacggcgggggtgagtgcgagaacaatttatgttttcttcttcttactctcttattcttctgctacttctcaacattgtt |
28005236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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