View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12521_low_56 (Length: 202)

Name: NF12521_low_56
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12521_low_56
NF12521_low_56
[»] chr1 (2 HSPs)
chr1 (93-184)||(34302081-34302172)
chr1 (1-61)||(34302167-34302227)
[»] chr4 (1 HSPs)
chr4 (127-184)||(9109459-9109516)


Alignment Details
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 93 - 184
Target Start/End: Complemental strand, 34302172 - 34302081
Alignment:
Q  93 ttgataatgtaaggatgtatttgaaattgagtaaataaggtcaatccgagatagatttgataacagattacaactgagggacaaatcacaat 184  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34302172 ttgataatgtaaggatgtatttgaaattgagtcaataaggtcaatccgagatagatttgataacagattacaactgagggacaaatcacaat 34302081  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 34302227 - 34302167
Alignment:
Q  1 atctggtccatctgatatttgaaattgcaagacggtaatcaaattcgttgagccattgata 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34302227 atctggtccatctgatatttgaaattgcaagacggtaatcaaatttgttgagccattgata 34302167  T

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Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 9109459 - 9109516
Alignment:
Q  127 ataaggtcaatccgagatagatttgataacagattacaactgagggacaaatcacaat 184  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  9109459 ataaggtcaatctaagatagatttgataacagattacaactgagggacaaatcacaat 9109516  T

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