View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12521_low_9 (Length: 441)
Name: NF12521_low_9
Description: NF12521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12521_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 8524462 - 8524881
Alignment:
| Q |
1 |
tgtgttaggttagaaaaagacatagtatgaattgcccctttcaatgaacaataaaacagatttaagattctaagagaagtgctgcaacttaattctgaaa |
100 |
Q |
| |
|
||||||||||||||||||||||| | ||||| |||| | ||| ||||| |||||| |||||||||||||||||| ||||||||||||||| || |
|
|
| T |
8524462 |
tgtgttaggttagaaaaagacattg---gaatttccccatggaattgacaatttgacagatccaagattctaagagaagtgttgcaacttaattctggaa |
8524558 |
T |
|
| Q |
101 |
gttgcccttgaagtccaagattatatgacatatctagttcttgaatacttggtaaacaaagaaggcttcttttcagttttcctcttaatcctgtaaatcc |
200 |
Q |
| |
|
|||| ||||||||| || |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||| | | |
|
|
| T |
8524559 |
gttggccttgaagttcatcattaaatgacatatctagttcttgaatacctggtaaacaaagaaggcttcttttcagttttccgcttaatcttgtctctgc |
8524658 |
T |
|
| Q |
201 |
aaggttaagagtaaccaaagaggaagattggttgaacagcaaagcaatggagtttggtcttaatgaagacaaatctgtattatccaaaaacaactccctc |
300 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8524659 |
aagattaagagtgaccaaagaggaagattggttgaatagcaaagcaatggagtttggtcttaatgaagacaaatctgtatcatccaaaaacaactccctc |
8524758 |
T |
|
| Q |
301 |
aagtttgttgtgttttgcacaagtctcttcaaggtggtctctttccaaactaaattgtaataataatgcccagatagatgaagtgattgtaatttgcaaa |
400 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| | |||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
8524759 |
aagtttgttgcgttttgcacaagtctcttcaaggtgctctctttccaaactaaattgtattgataagacccagagagatgaagtgattgtaatttgcaaa |
8524858 |
T |
|
| Q |
401 |
ggtgtgagatttgagttggaatt |
423 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
8524859 |
ggtgtgagatttgagttggaatt |
8524881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 177; Significance: 3e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 7 - 423
Target Start/End: Complemental strand, 25521615 - 25521199
Alignment:
| Q |
7 |
aggttagaaaaagacatagtatgaattgcccctttcaatgaacaataaaacagatttaagattctaagagaagtgctgcaacttaattctgaaagttgcc |
106 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| ||| |||| ||| || || ||||||||||||||||| || || ||||| | |||||| | |
|
|
| T |
25521615 |
aggttagaaaaagacatagtaggaatttccccttcgaatccacaagctgacaaatccaatattctaagagaagtgctacagctcaattccggaagttggc |
25521516 |
T |
|
| Q |
107 |
cttgaagtccaagattatatgacatatctagttcttgaatacttggtaaacaaagaaggcttcttttcagttttcctcttaatcctgtaaatccaaggtt |
206 |
Q |
| |
|
|||||||| || |||| |||||||||||| |||||||||||||||||||||||||| ||| ||||| | |||||||||||||||||| || ||| || |
|
|
| T |
25521515 |
cttgaagttcatcattaaatgacatatctatttcttgaatacttggtaaacaaagaatgctccttttgaattttcctcttaatcctgttgatttaagatt |
25521416 |
T |
|
| Q |
207 |
aagagtaaccaaagaggaagattggttgaacagcaaagcaatggagtttggtcttaatgaagacaaatctgtattatccaaaaacaactccctcaagttt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||| || ||| |
|
|
| T |
25521415 |
tagagtaaccaaagaggaagattggttgaaaagcaaagcaatggagtttggtcttatagaagacatatttgtataatccaaaaacaactcctgtaaattt |
25521316 |
T |
|
| Q |
307 |
gttgtgttttgcacaagtctcttcaaggtggtctctttccaaactaaattgtaataataatgcccagatagatgaagtgattgtaatttgcaaaggtgtg |
406 |
Q |
| |
|
|||| ||||||| ||| ||||| ||| |||||||||||||||||||| ||| | ||| |||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
25521315 |
gttgcattttgcaaaagcctctttaagatggtctctttccaaactaaaacataaccaaaatacccagaaagatgaagtgattgtaatttggaaaggtgtg |
25521216 |
T |
|
| Q |
407 |
agatttgagttggaatt |
423 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
25521215 |
agatttgagttggaatt |
25521199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 4e-91; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 67 - 423
Target Start/End: Original strand, 42125067 - 42125426
Alignment:
| Q |
67 |
attctaagagaagtgctgcaacttaattctgaaagttgcccttgaagtccaagattatatgacatatctagttcttgaatacttggtaaacaaagaaggc |
166 |
Q |
| |
|
|||||||||||||| || ||||| ||||||| ||||| |||| ||| |||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
42125067 |
attctaagagaagtactacaactcaattctggtagttgtccttcaaggttgtgattatatgacatatctaactcttgaatacttggtaaacaaagtaggc |
42125166 |
T |
|
| Q |
167 |
ttcttttcagttttcctcttaatcctgtaaatccaaggttaagagtaaccaaagaggaagattggttgaacagcaaagcaatggagtttggtcttaatga |
266 |
Q |
| |
|
|||||||||||||||| |||||||||| || ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
42125167 |
ttcttttcagttttccagttaatcctgttgatttaagattaagagtaaccaaagaggaagattggttgaagagcaaagcaatggagtttggtcttattga |
42125266 |
T |
|
| Q |
267 |
agacaaatctgtattatccaaaaacaactccctcaagtttgttgtgttttgcacaagtctcttcaaggtggtctctttccaaactaaattgtaataa--- |
363 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||| ||||||| ||||| |||| |||||||||||| ||||||||||||||||| | | |||| |
|
|
| T |
42125267 |
agacatatttgtattatccaaaaacagctccctcaaatttgttgcattttgaacaaatctcttcaaggtcgtctctttccaaactaactgatcataaccg |
42125366 |
T |
|
| Q |
364 |
taatgcccagatagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatt |
423 |
Q |
| |
|
|| ||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
42125367 |
gtatatccagagagatgaagtgattgtaatttggaaaggtgtgagatttgaattggaatt |
42125426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 66 - 423
Target Start/End: Original strand, 42130300 - 42130651
Alignment:
| Q |
66 |
gattctaagagaagtgctgcaacttaattctgaaagttgcccttgaagtccaagattatatgacatatctagttcttgaatacttggtaaacaaagaagg |
165 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| |||||| ||||||||| || |||||||||||||||||| ||||||||||||| |||||||| |||| |
|
|
| T |
42130300 |
gattctaagagaagtgctacaactcaattctggaagttggccttgaagttcatcattatatgacatatctagctcttgaatacttgctaaacaaataagg |
42130399 |
T |
|
| Q |
166 |
cttcttttcagttttcctcttaatcctgtaaatccaaggttaagagtaaccaaagaggaagattggttgaacagcaaagcaatggagtttggtcttaatg |
265 |
Q |
| |
|
||||||||||||||||| ||||||| ||| | ||| |||||||| || ||||| |||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
42130400 |
cttcttttcagttttccgcttaatcttgtgtaatgaagattaagagtgactaaagataaagattggttgaggagcaaagcaatggagtttggtcttattg |
42130499 |
T |
|
| Q |
266 |
aagacaaatctgtattatccaaaaacaactccctcaagtttgttgtgttttgcacaagtctcttcaaggtggtctctttccaaactaaattgtaataata |
365 |
Q |
| |
|
|||||| |||||| |||||||||| ||| | || | ||||| ||||||| || ||||||||||| ||||||||||||| ||| || ||||| |
|
|
| T |
42130500 |
aagacatatctgtggagtccaaaaacagctctcgtaaatctgttgcattttgcaacagcctcttcaaggtagtctctttccaaattaa---gtcataatt |
42130596 |
T |
|
| Q |
366 |
atgcccagatagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatt |
423 |
Q |
| |
|
| |||| ||||||||||||||||||||| | ||||| |||||||||||||||||| |
|
|
| T |
42130597 |
tt---cagagagatgaagtgattgtaatttggataggtgagagatttgagttggaatt |
42130651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 120 - 415
Target Start/End: Complemental strand, 34231288 - 34230999
Alignment:
| Q |
120 |
attatatgacatatctagttcttgaatacttggtaaacaaagaaggcttcttttcagttttcctcttaatcctgtaaatccaaggttaagagtaaccaaa |
219 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||| |||||| |||||| ||||| ||| || ||| ||||||||||||| | |
|
|
| T |
34231288 |
attatatgacatatctagctcttgaatacttggtaaacaaagaatgctctttttcaattttccacttaagattgtctctctaagattaagagtaaccaga |
34231189 |
T |
|
| Q |
220 |
gaggaagattggttgaacagcaaagcaatggagtttggtcttaatgaagacaaatctgtattatccaaaaacaactccctcaagtttgttgtgttttgca |
319 |
Q |
| |
|
||| ||||| | ||||| ||||| |||||||||||||||| |||||| ||||||| ||||||||||| |||||| || |||||| |||||||| |
|
|
| T |
34231188 |
gagaaagatcgattgaagagcaagtttatggagtttggtcttatcaaagacatgtctgtataatccaaaaacagctcccttaaacttgttgcgttttgca |
34231089 |
T |
|
| Q |
320 |
caagtctcttcaaggtggtctctttccaaactaaattgtaataataatgcccagatagatgaagtgattgtaatttgcaaaggtgtgagatttgag |
415 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| || || || |||||| ||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
34231088 |
caagtctcttcaaggtagtctctttccaaactaactt------atcattcccagaaagatgaagtgattgtaatttggaaaggtccgagatttgag |
34230999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 56 - 353
Target Start/End: Original strand, 42118489 - 42118780
Alignment:
| Q |
56 |
acagatttaagattctaagagaagt------gctgcaacttaattctgaaagttgcccttgaagtccaagattatatgacatatctagttcttgaatact |
149 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||| ||||||| | |||| |||| || | || ||| ||||||||||||| |||| || || |
|
|
| T |
42118489 |
acagatctaagattctaagagaagtagtattgctgcaactcaattctggatgttggccttcaaattca---ttaaatgacatatctagctcttccatgct |
42118585 |
T |
|
| Q |
150 |
tggtaaacaaagaaggcttcttttcagttttcctcttaatcctgtaaatccaaggttaagagtaaccaaagaggaagattggttgaacagcaaagcaatg |
249 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||| | |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42118586 |
tggtaaacaaagtaggcttcttttcagttttccacttaatcctgtctctgcaagattaagagtaaccaaagaggaagattggttgaa------------- |
42118672 |
T |
|
| Q |
250 |
gagtttggtcttaatgaagac----aaatctgtattatccaaaaacaactccctcaagtttgttgtgttttgcacaagtctcttcaaggtggtctctttc |
345 |
Q |
| |
|
||||||||||||| ||||||| | || ||||||||||||||||| ||||||||| ||||||| ||||| |||| |||||||||||| ||||||||| |
|
|
| T |
42118673 |
gagtttggtcttattgaagacatatatatttgtattatccaaaaacatctccctcaaatttgttgcattttgaacaaatctcttcaaggtcgtctctttc |
42118772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 247 - 415
Target Start/End: Complemental strand, 34239204 - 34239042
Alignment:
| Q |
247 |
atggagtttggtcttaatgaagacaaatctgtattatccaaaaacaactccctcaagtttgttgtgttttgcacaagtctcttcaaggtggtctctttcc |
346 |
Q |
| |
|
|||||||| ||||||| ||||||| ||||| || ||||||||||| |||||| || |||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
34239204 |
atggagttatgtcttaaagaagacatatctgaataatccaaaaacagctcccttaaacttgttgcgttttgcacaagtctctttaaggtggtctctttcc |
34239105 |
T |
|
| Q |
347 |
aaactaaattgtaataataatgcccagatagatgaagtgattgtaatttgcaaaggtgtgagatttgag |
415 |
Q |
| |
|
|||||| | | |||||||||||| ||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
34239104 |
aaacta------actcataatgcccagaaagatgaagtgattgtaatttggaaaggtatgagatttgag |
34239042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 126 - 423
Target Start/End: Complemental strand, 41712256 - 41711963
Alignment:
| Q |
126 |
tgacatatctagttcttgaatacttggtaaacaaagaaggcttcttttcagttttcctcttaatcctgtaaatccaaggttaagagtaaccaaagaggaa |
225 |
Q |
| |
|
||||||||||||||||||||| | |||||| || |||| | | |||| || ||||| |||||||||||| | |||| |||||||| ||||||| |||| |
|
|
| T |
41712256 |
tgacatatctagttcttgaatgcctggtaagcagagaatgttatttttaaggtttccgcttaatcctgtatctgcaagattaagagtcaccaaagtggaa |
41712157 |
T |
|
| Q |
226 |
gattggttgaacagcaaagcaatggagtttggtcttaatgaagacaaatctgtattatccaaaaacaactccctcaa--gtttgttgtgttttgcacaag |
323 |
Q |
| |
|
|| || ||||| |||||| | |||||||||||| ||| |||||||| |||||| | ||||||||| | | || || || |||| |||||||| ||| |
|
|
| T |
41712156 |
gaatgattgaagagcaaatccatggagtttggttttattgaagacatatctgtgtcatccaaaaatagtttgcttaaatattagttgcgttttgcataag |
41712057 |
T |
|
| Q |
324 |
tctcttcaaggtggtctctttccaaactaaattgtaataataatgcccagatagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatt |
423 |
Q |
| |
|
|| || |||||||| ||||||||||||| | | ||||| | ||| ||||||||||||||||||||| | ||||||||||||||| |||||||| |
|
|
| T |
41712056 |
cctatttaaggtggtttctttccaaacta------attcataattctgagagagatgaagtgattgtaatttggagaggtgtgagatttgaattggaatt |
41711963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 348
Target Start/End: Complemental strand, 41570546 - 41570262
Alignment:
| Q |
64 |
aagattctaagagaagtgctgcaacttaattctgaaagttgcccttgaagtccaagattatatgacatatctagttcttgaatacttggtaaacaaagaa |
163 |
Q |
| |
|
|||||||||||||||||||| || || || |||| |||||| |||| ||| | ||| | |||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
41570546 |
aagattctaagagaagtgctacagctcaaatctggaagttgaccttcaaggttatcattctttgacatatctagctcttgaatatttggtaaacaaagaa |
41570447 |
T |
|
| Q |
164 |
ggcttcttttcagttttcctcttaatcctgtaaatccaaggttaagagtaaccaaagaggaagattggttgaacagcaaagcaatggagtttggtcttaa |
263 |
Q |
| |
|
| | ||||| ||||| ||||||||||| | ||| ||||| ||| |||||||||||||| ||||| | | || | ||||||| | | |
|
|
| T |
41570446 |
tgttatttttccaatttccacttaatcctgttctttgaagactaagactaatcaaagaggaagatttattgaagatcgaattcaacaagtttgggttgat |
41570347 |
T |
|
| Q |
264 |
tgaagacaaatctgtattatccaaaaacaactccctcaagtttgttgtgttttgcacaagtctcttcaaggtggtctctttccaa |
348 |
Q |
| |
|
||||| || |||||| | ||||||| | ||||| ||| |||||| ||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
41570346 |
tgaagtcatatctgtttcatccaaatataactcttgcaaaattgttgcgttttgcacaagtctcttcaaagtggtttctttccaa |
41570262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 56 - 423
Target Start/End: Original strand, 11119842 - 11120200
Alignment:
| Q |
56 |
acagatttaagattctaagagaagtgctgcaacttaattctgaaagttgcccttgaagtccaagattatatgacatatctagttcttgaatacttggtaa |
155 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||| ||||||| |||||| |||| || |||||| ||||||| ||| ||||||||||||||||| |
|
|
| T |
11119842 |
acagatctaagattctaagagaaatgctgcaactcaattctggaagttggccttcaaagttgggattatccgacatatatagctcttgaatacttggtaa |
11119941 |
T |
|
| Q |
156 |
acaaagaaggcttcttttcagttttcctcttaatcctgtaaatccaaggttaagagtaaccaaagaggaagattggttgaacagcaaagcaatggagttt |
255 |
Q |
| |
|
|||||||| | | |||||| || || |||||| | || | ||| |||| ||||||||||||||||||||||||| ||||||| || ||||||| |
|
|
| T |
11119942 |
acaaagaaagttatttttcaagttcccacttaattcagttgctttaagactaagtataaccaaagaggaagattggttgaagagcaaaggaaaggagttt |
11120041 |
T |
|
| Q |
256 |
ggtcttaatgaagacaaatctgtattatccaaaaacaactccctcaagtttgttgtgttttgcacaagtctcttcaaggtggtctctttccaaactaaat |
355 |
Q |
| |
|
||||||| |||||||| || || ||| |||||||| ||| || | ||||| ||||||| ||||| ||||||||| |||||||| |||||| |
|
|
| T |
11120042 |
ggtcttattgaagacatattagttctatacaaaaacagctcttgtaaatctgttgcattttgcagcagtctgttcaaggtgatctctttcaaaacta--- |
11120138 |
T |
|
| Q |
356 |
tgtaataataatgcccagatagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatt |
423 |
Q |
| |
|
| | || |||||| |||| ||| |||||||||||| |||| | ||||||||||||||||||| |
|
|
| T |
11120139 |
------actcattcccagagagataaagggattgtaatttggaaagatatgagatttgagttggaatt |
11120200 |
T |
|
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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 421
Target Start/End: Original strand, 12249956 - 12250245
Alignment:
| Q |
126 |
tgacatatctagttcttgaatacttggtaaacaaagaaggcttcttttc-agttttcctcttaatcctgtaaatccaaggttaagagtaaccaaagagga |
224 |
Q |
| |
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|
| T |
12249956 |
tgacatgtctagctcttgaatacttggcaaacaaaga-gcattcttttttaattttccacttaattctgttgatttaagattaagagtaaccaaatagga |
12250054 |
T |
|
| Q |
225 |
agattggttgaacagcaaagcaatggagtttggtcttaatgaagacaaatctgtattatccaaaaacaactccctcaagtttgttgtgttttgcacaagt |
324 |
Q |
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|
| T |
12250055 |
agatttattgaagagaaaatttatggagtttagtcttattgaagacatgtttgtttgatttaaaaatagctccctcaaatttgttgcattttgcacaaac |
12250154 |
T |
|
| Q |
325 |
ctcttcaaggtggtctctttccaaactaaattgtaataataatgcccagatagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaa |
421 |
Q |
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| T |
12250155 |
ctcttcaacgtggtttccccccaaattaaatc------aaaattctcggagagatgaagtgattctaatttggaaaggtgtgagatttgagttggaa |
12250245 |
T |
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