View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12522_high_1 (Length: 842)
Name: NF12522_high_1
Description: NF12522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12522_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 778; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 778; E-Value: 0
Query Start/End: Original strand, 20 - 827
Target Start/End: Original strand, 6604478 - 6605284
Alignment:
| Q |
20 |
tgtctaatcataagctgaatctcactttgatgatcatggcttgtcagattgtaacaatgatagagataaatgtgaaaagcatcaaggagagagtagttct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6604478 |
tgtctaatcataagctgaatctcactttgatgatcatggcttgtcagattgtaacaatgatagagataaatgtgaaaagcatcaaggagagagtagttct |
6604577 |
T |
|
| Q |
120 |
ttttccctgcctcaaactgcccttgaacttttctctataattaaagccagcattttccaaaaacttggcacgacatcattttatggagttgtttccacag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6604578 |
ttttccctgcctcaaactgcccttgaacttttctctataattaaagccagcattttccaaaaacttggcacgacatcattttatggagttgtttccacag |
6604677 |
T |
|
| Q |
220 |
tccctacatttgaagagggaaatgcgcctgattttctcgacaagaaagatttggaaacttgtggctctgagactgattcacatcctgcgagcaggttgca |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
6604678 |
tccctacatttgaagagggaaatgcgcctgattttctcgacaagaaagatttggaaacttgtggccctgagactgattcacatcctgcgagcaggttgca |
6604777 |
T |
|
| Q |
320 |
gtctactgaagactcaactccttattgtgaagttattaggattcgtgagaggagcgatgctccagtttcttcagacagcaatggttcggatcagttgaag |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6604778 |
gtctactgaagactcaactccttattgtgaagttattaggattcgtgagaggagcgatgctccagtttcttcagacagcaatggttcggatcagttgaag |
6604877 |
T |
|
| Q |
420 |
cggtttgatgtaattgatacttgttcagatcaccactttttcaatgagagaaaagggtgccgatatctcaggttataaaattgacacatcacttaagtaa |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6604878 |
cggtttgatgtaattgatacttgttcagatcaccactttttcaatgagagaaaagggtgccgatatctcaggttataaaattgacacatcacttaagtaa |
6604977 |
T |
|
| Q |
520 |
cataattatattgaaagcattttggcatacnnnnnnnccctctcctttgctcctttgtaggttaagaaagattgggcaaaaaaggtacagcaagaatgga |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6604978 |
cataattatattgaaagcattttggcatac-ttttttccctctcctttgctcctttgtaggttaagaaagattgggcaaaaaaggtacagcaagaatgga |
6605076 |
T |
|
| Q |
620 |
gcatcctggagaaaaaccttcctggtgcatacttctcactttatttattataactatctcagcctaattaaaccaaccaactatctcactaaataagcaa |
719 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6605077 |
gcatcctggagaaaaaccttcctggtgcatacttctcactttatttattataactatctcagcctaattaaaccaaccaactatctcactaaataagcaa |
6605176 |
T |
|
| Q |
720 |
tgtttattgtccattaatatttaatatgaaaataagtagcctattgagtaaataagtgtccgagttaatttacttacaagaaagggaaatcactcaaaat |
819 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6605177 |
tgtttattgtccattaatatttaatatgaaaataagtagcctattgagtaaataagtgtccgagttaatttacttacaagaaagggaaatcactcaaaat |
6605276 |
T |
|
| Q |
820 |
atgatgtc |
827 |
Q |
| |
|
|||||||| |
|
|
| T |
6605277 |
atgatgtc |
6605284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 572 - 653
Target Start/End: Original strand, 35442557 - 35442638
Alignment:
| Q |
572 |
ctttgtaggttaagaaagattgggcaaaaaaggtacagcaagaatggagcatcctggagaaaaaccttcctggtgcatactt |
653 |
Q |
| |
|
|||| ||||| || |||| ||||| |||||||| |||||||||||||||||||| ||||||| ||||||||| ||||||| |
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|
| T |
35442557 |
ctttataggtaaaaaaaggttgggtgaaaaaggttcagcaagaatggagcatccttgagaaaagtcttcctggtacatactt |
35442638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 616; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 20 - 822
Target Start/End: Complemental strand, 3699059 - 3698258
Alignment:
| Q |
20 |
tgtctaatcataagctgaatctcactttgatgatcatggcttgtcagattgtaacaatgatagagataaatgtgaaaagcatcaaggagagagtagttct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3699059 |
tgtctaatcataagctgaatctcactttgatgatcagggattgtcagattgtaacagtgatagagataaatgtgaaaagcatcaaggagagagtagttcg |
3698960 |
T |
|
| Q |
120 |
ttttccctgcctcaaactgcccttgaacttttctctataattaaagccagcattttccaaaaacttggcacgacatcattttatggagttgtttccacag |
219 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
3698959 |
ttttcccttcctcaagctgcccttgaacttttctctagcattaaagccggcattttccaaaaacttggcatgacatcattttatggagctgtttccacag |
3698860 |
T |
|
| Q |
220 |
tccctacatttgaagagggaaatgcgcctgattttctcgacaagaaagatttggaaacttgtggctctgagactgattcacatcctgcgagcaggttgca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3698859 |
tccctacatttgaagagggaaatgcgcccgattttgttgacaagaaagatttggaaacttgtggccctgagactgattcacatcctgcgagcaggttgca |
3698760 |
T |
|
| Q |
320 |
gtctactgaagactcaactccttattgtgaagttattaggattcgtgagaggagcgatgctccagtttcttcagacagcaatggttcggatcagttgaag |
419 |
Q |
| |
|
||||||||||||| ||||||| ||| |||||||||||||||||| |||||||||| |||||| ||||||| ||||||||||||||| |||||||||||| |
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|
| T |
3698759 |
gtctactgaagacccaactccatatggtgaagttattaggattcatgagaggagcagtgctccggtttctttagacagcaatggttcagatcagttgaag |
3698660 |
T |
|
| Q |
420 |
cggtttgatgtaattgatacttgttcagatcaccactttttcaatgagagaaaaggg-tgccgatatctcaggttataaaattgacacatcacttaagta |
518 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698659 |
cggtttgatgtaattgatacttgtttagatcaccactttttcaatgagagaaaagggttgccaatatctcaggttataaaattgacacatcacttaagta |
3698560 |
T |
|
| Q |
519 |
acataattatattgaaagcattttggcatacnnnnnnnccctctcctttgctcctttgtaggttaagaaagattgggcaaaaaaggtacagcaagaatgg |
618 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698559 |
acataattatattgaaagcattttggctta--ttttttccctctcctttgctcctttgtaggttaagaaagattgggcaaaaaaggtacagcaagaatgg |
3698462 |
T |
|
| Q |
619 |
agcatcctggagaaaaaccttcctggtgcatacttctcactttatttattataactatctcagcctaattaaaccaacc-aactatctcactaaataagc |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||| |||||||||||||||||||| |
|
|
| T |
3698461 |
agcatcctggagaaaaaccttcctggtgcatacttctcacttta-ttattataactatctcagtcaaattaaaccaaccaaactatctcactaaataagc |
3698363 |
T |
|
| Q |
718 |
aatgtttattgtccattaatatttaatatgaaaataagtagcctattgagtaaataagtgtccgagttaatttacttacaagaaagggaaatcactcaaa |
817 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
3698362 |
aatgtttattgtcaattaatatttaatctgaaaataagtagcctattgagtaaataaatgtccgagttaatttacttgcaagaaagggaaatcactcgaa |
3698263 |
T |
|
| Q |
818 |
atatg |
822 |
Q |
| |
|
||||| |
|
|
| T |
3698262 |
atatg |
3698258 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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