View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12522_high_6 (Length: 330)
Name: NF12522_high_6
Description: NF12522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12522_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 308
Target Start/End: Complemental strand, 48106552 - 48106260
Alignment:
| Q |
16 |
caaaggcagatttcccatttggatgtgggatgaaccatcatatactcacaaacattgactaccaggaatggtttgtgtcaagattcaaatacacaacttt |
115 |
Q |
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| T |
48106552 |
caaaggcagatttcccatttggatgtgggatgaaccatcatatactcacaaacattgactaccaggaatggtttgtgtcaagattcaaatacacaacttt |
48106453 |
T |
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| Q |
116 |
caccaatgaaatgaaatggtatagtacagaaataattccaggccaagaaaactacactatctcagatacaatgttagaatttgctaaagataatggaatt |
215 |
Q |
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| T |
48106452 |
caccaatgaaatgaaatggtatagtacagaaataattccaggccaagaaaactacactatctcagatgcaatgttagaatttgctaaagataatggaatt |
48106353 |
T |
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| Q |
216 |
tctgtcagaggtcataacattttctgggacgatgaaaaatatcaacctgaatgggttaagtatttatcgcccgatgaattgcgcaaagccgcg |
308 |
Q |
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| T |
48106352 |
tctgtcagaggtcataacattttctgggacgatgaaaaatatcaacctgaatgggttaagtatttatcgcccgatgaattgcgcaaagccgcg |
48106260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 48067006 - 48066770
Alignment:
| Q |
16 |
caaaggcagatttcccatttggatgtgggatgaaccatcatatactcacaaacattgactaccaggaatggtttgtgtcaagattcaaatacacaacttt |
115 |
Q |
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| T |
48067006 |
caaaggcagatttcccattcggatgtgggatgaactatcacatcctcacaaacattgagtaccagaaatggtttgtgtcaagattcaagtacacaacttt |
48066907 |
T |
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| Q |
116 |
caccaatgaaatgaaatggtatagtacagaaataattccaggccaagaaaactacactatctcagatacaatgttagaatttgctaaagataatggaatt |
215 |
Q |
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| T |
48066906 |
cactaatgagatgaagtggtatagtacagagaaaattcaaggccaggaaaactatactattcctgatgccatgctgaaatttgccaaagaaaatggcatt |
48066807 |
T |
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| Q |
216 |
tctgtcagaggtcataacattttctgggacgatgaaa |
252 |
Q |
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| T |
48066806 |
tctgtcagaggtcatgccattttgtgggacgatgaaa |
48066770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 48062913 - 48062663
Alignment:
| Q |
20 |
ggcagatttcccatttggatgtgggatgaaccatcatatactcacaaacattgactaccaggaatggtttgtgtcaagattcaaatacacaactttcacc |
119 |
Q |
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| T |
48062913 |
ggcaaattttccatatggatgtgcgatgaaccgtcatatcctcacaaacagtgactaccagaaatggtttgtgtcaagattcaaatacacaactttcact |
48062814 |
T |
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| Q |
120 |
aatgaaatgaaatggtatagtacagaaataattccaggccaagaaaactacactatctcagatacaatgttagaatttgctaaagataatggaatttctg |
219 |
Q |
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| T |
48062813 |
aacgagatgaagtggtatagtacagagaaaatccaaggccatgaaaactatactatcccagatgccatgctgaaatttgctaaggaaaatggcatatctg |
48062714 |
T |
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| Q |
220 |
tcagaggtcataacattttctgggacgatgaaaaatatcaacctgaatggg |
270 |
Q |
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| T |
48062713 |
tcagaggtcataacattttgtgggacagtgaaagacgtcaacctgaatggg |
48062663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 276
Target Start/End: Complemental strand, 48099951 - 48099691
Alignment:
| Q |
16 |
caaaggcagatttcccatttggatgtgggatgaaccatcatatactcacaaacattgactaccaggaatggtttgtgtcaagattcaaatacacaacttt |
115 |
Q |
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|||||||| |||||||| |||||||||||||||||||| | || || |||||| |||| |||||| ||||||||||||||||||||| |||||| |||| |
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| T |
48099951 |
caaaggcaaatttcccacttggatgtgggatgaaccattacatccttacaaactttgagtaccagagatggtttgtgtcaagattcaagtacacagcttt |
48099852 |
T |
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| Q |
116 |
caccaatgaaatgaaatggtatagtacagaaataattccaggccaagaaaactacactatctcagatacaatgttagaatttgctaaagataatggaatt |
215 |
Q |
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|| ||||| ||||| |||||||||||||| | | ||| |||||| |||||||| |||||| ||||| | ||| | |||| || ||||| ||||| ||| |
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| T |
48099851 |
tactaatgagatgaagtggtatagtacagagagatttcaaggccaggaaaactatactatcccagatgccatgatgaaattcgccaaagaaaatggcatt |
48099752 |
T |
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| Q |
216 |
tctgtcagaggtcataacattttctgggacgatgaaaaatatcaacctgaatgggttaagt |
276 |
Q |
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| T |
48099751 |
tctgtcagaggtcataccgttttctgggacgatgaaacttttcagcctaaatgggttaagt |
48099691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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