View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12522_high_7 (Length: 321)
Name: NF12522_high_7
Description: NF12522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12522_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 14176742 - 14176444
Alignment:
| Q |
18 |
tcagtgatgaggatgtactccgaactagggtacctggtagatggatgatgatctctgcttgatctcctgagctgagatgttggggattgctctccatcct |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| | |
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| T |
14176742 |
tcagtgatgaggatgtactccgaactagggtacctggtagatggatgatgatctctgcttgatctcctgagatgagatgttgtggattgctctccatctt |
14176643 |
T |
|
| Q |
118 |
gaacatcttcatcatcatcatcttcaactactggctcaccatcaaccctagggtcttcatcaagatctcccccttctgtggcaactcttacaggaggagt |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14176642 |
gaacatcttcatcatcaccatcttcaactactggctcaccatcaaccccagggtcttcatcaagatctcccccttctgtggcaactcttacaggaggagt |
14176543 |
T |
|
| Q |
218 |
ggtaagtgtaagatcaaccttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgctcatgaaacactacatctctgcttct |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14176542 |
ggtaagtgtaagatcaaccttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgctcatgaaacactacatctctgcttct |
14176444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 28609134 - 28609432
Alignment:
| Q |
18 |
tcagtgatgaggatgtactccgaactagggtacctggtagatggatgatgatctctgcttgatctcctgagctgagatgttggggattgctctccatcct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||| | |
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| T |
28609134 |
tcagtgatgaggatgtactccgaactagggtacctggtagatggatgatgatctctgcttaatctcctgagatgagatgttgtggattgctctccatctt |
28609233 |
T |
|
| Q |
118 |
gaacatcttcatcatcatcatcttcaactactggctcaccatcaaccctagggtcttcatcaagatctcccccttctgtggcaactcttacaggaggagt |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28609234 |
gaacatcttcatcatcaccatcttcaactactggctcaccatcaaccccagggtcttcatcaagatctcccccttctgtggcaactcttacaggaggagt |
28609333 |
T |
|
| Q |
218 |
ggtaagtgtaagatcaaccttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgctcatgaaacactacatctctgcttct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28609334 |
ggtaagtgtaagatcaaccttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgcttatgaaacactacatctctgcttct |
28609432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 12933472 - 12933174
Alignment:
| Q |
18 |
tcagtgatgaggatgtactccgaactagggtacctggtagatggatgatgatctctgcttgatctcctgagctgagatgttggggattgctctccatcct |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| | |
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|
| T |
12933472 |
tcagtgatgaggatgtactccgaactagggtacctggtagatggatgatgatctctgcttgatctcctgagatgagatgttgtggattgctctccatctt |
12933373 |
T |
|
| Q |
118 |
gaacatcttcatcatcatcatcttcaactactggctcaccatcaaccctagggtcttcatcaagatctcccccttctgtggcaactcttacaggaggagt |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12933372 |
gaacatcttcatcatcaccatcttcaactactggctcaccatcaaccccagggtcttcatcaagatctcccccttctgtggcaactcttacaggaggagt |
12933273 |
T |
|
| Q |
218 |
ggtaagtgtaagatcaaccttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgctcatgaaacactacatctctgcttct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12933272 |
ggtaagtgtaagatcaaccttaccataacgtttaggtgtttctagaatagtagaatctgacatagtttcttgctcatgaaacactacatctctgcttct |
12933174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 15299261 - 15298964
Alignment:
| Q |
19 |
cagtgatgaggatgtactccgaactagggtacctggtagatggatgatgatctctgcttgatctcctgagctgagatgttggggattgctctccatcctg |
118 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
15299261 |
cagtgatgagaatgtactccaaactagggtacctggtagatggatgatgatctctgcttgatctcttgagctgagatgttgggcattgctctccatcctg |
15299162 |
T |
|
| Q |
119 |
aacatcttcatcatcatcatcttcaactactggctcaccatcaaccctagggtcttcatcaagatctcccccttctgtggcaactcttacaggaggagtg |
218 |
Q |
| |
|
||||||||| |||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15299161 |
aacatcttcctcatcaccatcttcaactactaactcaccattaaccccagggtcttcatcaagatctcccccttctgtggcaactcttacaggaggagtg |
15299062 |
T |
|
| Q |
219 |
gtaagtgtaagatcaaccttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgctcatgaaacactacatctctgcttct |
316 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15299061 |
gtaactgtaagatcaaccttaccataacgtttaggtgtttctggaatagcagaatctgacatagtttcttgctcatgaaacactacatctctgcttct |
15298964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 46 - 300
Target Start/End: Original strand, 38994822 - 38995074
Alignment:
| Q |
46 |
ggtacctggtagatggatgatgatctctgcttgatctcctgagctgagatgttggggattgctctccatcctgaacatcttcatcatcatcatcttcaac |
145 |
Q |
| |
|
||||||| |||||||||| ||||||||| ||||| | |||| || ||||| ||| ||||||||||||||| | | ||| |||||| ||||||||| |
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| T |
38994822 |
ggtacctagtagatggataatgatctctatttgatgttatgagttgtgatgtaggg-attgctctccatcctatcctttttcgtcatcaccatcttcaat |
38994920 |
T |
|
| Q |
146 |
tactggctcaccatcaaccctagggtcttcatcaagatctcccccttctgtggcaactcttacaggaggagtggtaagtgtaagatcaaccttaccataa |
245 |
Q |
| |
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| ||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||| |||||||||||| |||||||| |||||||||||| |
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|
| T |
38994921 |
tgttggctcaccatcaaccctagggttttaatcaagatctcccccttctttggcaactcttataggaggagtggttagtgtaaggtcaaccttaccaccg |
38995020 |
T |
|
| Q |
246 |
cgtttaggtgtttctagaatagcagaatctgacatagtttcttgctcatgaaaca |
300 |
Q |
| |
|
| ||||||||||| |||||| | ||| || ||||||||||||||||||||||| |
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|
| T |
38995021 |
tgcttaggtgtttcaggaatagta-aatttgtcatagtttcttgctcatgaaaca |
38995074 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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