View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12522_low_15 (Length: 242)
Name: NF12522_low_15
Description: NF12522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12522_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 29645627 - 29645822
Alignment:
| Q |
11 |
cacagatgacacaattacgagggctctttatcatgtaatcgaacacaagtaggaaggcatccacgacacatacgtcaaactaagtttttaacctctagag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29645627 |
cacagatgacacaattacgagggctctttatcctgtaaccgaacacaagtaggaaggcatccacgacacatacgtcaaactaagtttttaacctctagag |
29645726 |
T |
|
| Q |
111 |
ggacttttaaacaccaaatccctgccaataccaatctctccaaagctgatacgcacttttgacaaaatgcattatttactttctaaaataaataaatatt |
210 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29645727 |
ggacttttaaa-----------tgccaata-caagctctccaaagctgatacacacttttgacaaaatgcattatttactttctaaaataaataaatatt |
29645814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University