View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12522_low_16 (Length: 240)
Name: NF12522_low_16
Description: NF12522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12522_low_16 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 9980148 - 9980370
Alignment:
| Q |
18 |
cacacactttgtattctaccaaaaataagctataaagattttataatatagctaatggttgaatttaattattaataatctatctatgaggtataaagtt |
117 |
Q |
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| T |
9980148 |
cacacactttgtattctaccaaaaataagctataaagattttataatatagctaatggttgaatttaattattaataatctatctatgaggtataaagtt |
9980247 |
T |
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| Q |
118 |
cagcactactagccacaatttagttaaaatatgagaaacataacaaaaacctgcataaagttgttgacaatgcacaaaaaataataataagctattagag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9980248 |
cagcactactagccacaatttagttaaaatatgagaaacataacaaaaacctgcataaagttgttgacaatgcacaaaaaataataataagctattagag |
9980347 |
T |
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| Q |
218 |
caagaaccatgacacttatacca |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
9980348 |
caagaaccatgacacttatacca |
9980370 |
T |
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