View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12522_low_17 (Length: 240)
Name: NF12522_low_17
Description: NF12522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12522_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 1550205 - 1550084
Alignment:
| Q |
1 |
tgaattttcaaatgaagtttcagctatagtaattgatttgggttcacatacttgcaaagctgtttatgccggtgaagatgctcccaaagctgtgtttcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1550205 |
tgaattttcaaatgaagtttcagctatagtaattgatttgggttcacatacttgcaaagctgtttatgccggtgaagatgctcccaaagctgtgtttcct |
1550106 |
T |
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| Q |
101 |
tctgtaagtgctttcattacac |
122 |
Q |
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|||||||||||||||||||||| |
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| T |
1550105 |
tctgtaagtgctttcattacac |
1550084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 23022814 - 23022935
Alignment:
| Q |
1 |
tgaattttcaaatgaagtttcagctatagtaattgatttgggttcacatacttgcaaagctgtttatgccggtgaagatgctcccaaagctgtgtttcct |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||| ||||||||||||| || ||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
23022814 |
tgaattttcagatgaagtttcagctatagtaattgatctgggttcacatacgtgtaaagctggttatgctggtgaagatgctcccaaagctgtgtttcct |
23022913 |
T |
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| Q |
101 |
tctgtaagtgctttcattacac |
122 |
Q |
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|||||||||||||||||||||| |
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| T |
23022914 |
tctgtaagtgctttcattacac |
23022935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 1550026 - 1549982
Alignment:
| Q |
180 |
attgttattattatctgctttcagctttattgttttgccgttcat |
224 |
Q |
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| T |
1550026 |
attgttattattatctgctttcagctttattgttttgccgttcat |
1549982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 27997905 - 27998026
Alignment:
| Q |
1 |
tgaattttcaaatgaagtttcagctatagtaattgatttgggttcacatacttgcaaagctgtttatgccggtgaagatgctcccaaagctgtgtttcct |
100 |
Q |
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|
|||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
27997905 |
tgaattttcagatgaagtttcagctatagtaattgatctgggttcacatacttgtaaagctggttatgctggtgaagatgctcccaaagctgtgtttcct |
27998004 |
T |
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| Q |
101 |
tctgtaagtgctttcattacac |
122 |
Q |
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|||||||||||||||||||||| |
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| T |
27998005 |
tctgtaagtgctttcattacac |
27998026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 28005245 - 28005366
Alignment:
| Q |
1 |
tgaattttcaaatgaagtttcagctatagtaattgatttgggttcacatacttgcaaagctgtttatgccggtgaagatgctcccaaagctgtgtttcct |
100 |
Q |
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|
||||||| || |||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28005245 |
tgaatttgcagatgaagtttcagctatagtaattgatttgggttcacatacctgtaaagctggttatgccggtgaagatgctcccaaagctgtgtttcct |
28005344 |
T |
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| Q |
101 |
tctgtaagtgctttcattacac |
122 |
Q |
| |
|
|||||||||| |||||||||| |
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| T |
28005345 |
tctgtaagtgtgttcattacac |
28005366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 27998072 - 27998104
Alignment:
| Q |
180 |
attgttattattatctgctttcagctttattgt |
212 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
27998072 |
attggtattattatctgctttcagctttattgt |
27998104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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